1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacttatgcagagcattttttaaaaaggaaactgaactcaactttagtgtgtacaatactatcattaaccattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG
species | Oryza sativa |
transcript | LOC_Os08g26870.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG GTAGGTGACCATACAGANAGTATCACCTTTTGATCTA-GACCTTCEST: gi|109974602|gb|DT806998.1|DT806998
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTT-GATCTAAGACCTTC
EST: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCEST: gi|84117164|gb|CD150931.1|CD150931
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCEST: gi|58687907|gb|CK076594.1|CK076594
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACEST: gi|58692668|gb|CK081355.1|CK081355
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGAC
EST: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCEST: gi|29629366|gb|CB634377.1|CB634377
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCEST: gi|33683462|gb|CF311701.1|CF311701
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCEST: gi|58605333|gb|CK033366.1|CK033366
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
agtgtgtacaatactatcattaaccattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG
cattaac putative branch site (score: 2)
attaaccattttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttatgcagagcattttttaaaaaggaaactgaactcaactttagtgtgtacaatactatcattaaccattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT