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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatgcagagcattttttaaaaaggaaactgaactcaactttagtgtgtacaatactatcattaaccattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG

Basic information

species Oryza sativa
transcript LOC_Os08g26870.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g26870.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G377595_T01 (Zea mays), 3'ss of exon 6
gtacttatgcagagcattttttaaaaagga--aactgaactcaactttagtgtgtacaatactatcattaac--cattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG
||||  ||  |     | |  |||  | ||  || | ||  ||  ||||||| || ||  | || | ||||    ||| |||| |||||||  |||| |||||||||   ||| | |||||| |  | |||||| |||||  | ||||||||||||||||||| ||||||||| ||||||
gtacaaatctacc-tgtctaataagtaagagcaaattaatgcatttttagtgggtgcaccattaaccttaataatattctaaagtagaaacctcctacactgcagGTCAATGATCCTACAGACAACACCACCTTCGATCTTCGGCCTTCAGATGCCATAAACACTGCTGTTCGTTGCAAG

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G006468_T03 (Zea mays), 3'ss of exon 6
gtacttatgcagagcatt--ttttaaaaaggaaactgaactcaactttagtgtgtacaatactatcattaaccattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG
||||  ||  ||   | |  | |  || |  ||||| ||  ||  || |||| ||| |  | |  ||||||      |||| |||||||  ||   ||||||| | | |||   |||||| || |||||||| |||||  | ||||||||||||||||||||||||||||| ||||||
gtaccaatctagttgactgatctgtaagaacaaact-aatgcattttcagtgggtagaccattgacattaa------taaagtagaaacatccggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G053531_T02 (Zea mays), 3'ss of exon 6
gtacttatgcagagcattttttaaaaagga--aactgaactcaactttagtgtgtacaatactatcattaac--cattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG
||||  ||  |     | |  |||  | ||  || | ||  ||  ||||||| || ||  | || | ||||    ||| |||| |||||||  |||  |||||||||   ||| | |||||| |  |||||||| |||||  | ||||||||||||||||||||||||||||| ||||||
gtacaaatctacc-tgtctaataagtaagagcaaattaatgcatttttagtgggtgcaccattaaccttaataatattctaaagtagaaacctcctgcactgcagGTCAATGATCCTACAGACAACATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv18s0001g12960.t01 (Vitis vinifera), 3'ss of exon 7
--gtacttatgcagagcatttt-ttaaaaaggaaactgaactcaactttagtgtgtacaatactatcattaaccattttaaactagaaactgcctatac-tgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG
   || |  ||| |  |   || ||    |    | ||   |  |||| | |       |   ||    | | || ||   ||  ||   ||  | |   ||||||| ||| |  | | ||| ||  |||  ||||| ||  |||||||||||||||| |||||||||||| | ||||||
gcatattcctgctgtaccccttgttctttaattgattgccttgtacttcatta-----gaggatacaggtgatcaatt--gacatgatgttggatgtggatgcagGTGGGTAATGAAAAAGAGAGCGTCAGTTTTGACCTTCGACCTTCAGATGCCATTAACATTGCTGTTAGATGCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659232|gb|CB655507.1|CB655507
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGANAGTATCACCTTTTGATCTA-GACCTTC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTT-GATCTAAGACCTTC
EST: gi|29660675|gb|CB656950.1|CB656950
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29659550|gb|CB655825.1|CB655825
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|27920437|gb|CB096245.1|CB096245
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|109974602|gb|DT806998.1|DT806998
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29629367|gb|CB634378.1|CB634378
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGTTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|88831948|gb|CI014507.1|CI014507
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29663843|gb|CB660118.1|CB660118
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|3767979|gb|AU032006.1|AU032006
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATNCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29659488|gb|CB655763.1|CB655763
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|88844616|gb|CI021191.1|CI021191
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|86424485|gb|CI063246.1|CI063246
EST:     AAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: AAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29670738|gb|CB667013.1|CB667013
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|86433857|gb|CI094200.1|CI094200
EST:     TTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29675966|gb|CB672241.1|CB672241
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|88964523|gb|CI055219.1|CI055219
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29671385|gb|CB667660.1|CB667660
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|218504708|gb|FG953263.1|FG953263
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|84117164|gb|CD150931.1|CD150931
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29659844|gb|CB656119.1|CB656119
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29669212|gb|CB665487.1|CB665487
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|88221407|gb|CI221363.1|CI221363
EST:     AGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: AGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|58687907|gb|CK076594.1|CK076594
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGAC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGAC
EST: gi|29664873|gb|CB661148.1|CB661148
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|88219539|gb|CI219099.1|CI219099
EST:     GAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: GAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|86866657|gb|CI343508.1|CI343508
EST:     AATTCAA-AACCATCCTTTGCTG-ACTGTTTCTGACGAAG                         GTA-GTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: AATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|89182212|gb|CI113581.1|CI113581
EST:     AGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: AGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29657113|gb|CB653388.1|CB653388
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29678163|gb|CB674438.1|CB674438
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|22306513|gb|BQ907735.1|BQ907735
EST:     AATAAANAGAATTCAAGAAGCATACTGTGGCTGAACGGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTGTGATCTAAGACCTTCAGATGCC
genomic: AATAAA-AGAATTCAAGAAGCATACTGT-GCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29658491|gb|CB654766.1|CB654766
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGCCCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|58692668|gb|CK081355.1|CK081355
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|86418718|gb|CI053519.1|CI053519
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29629366|gb|CB634377.1|CB634377
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29668681|gb|CB664956.1|CB664956
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTTTGACGAAG                         GTAGGTGCCCATCCAGAAAGTATCCCCTTTGATTTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29660157|gb|CB656432.1|CB656432
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGGCCATACAGAAAGTATCCCCTTTGATTTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29669928|gb|CB666203.1|CB666203
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGCCCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29672180|gb|CB668455.1|CB668455
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGCCCATACAGAAAGTATCCCCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|86535529|gb|CI175735.1|CI175735
EST:     AGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: AGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|33683462|gb|CF311701.1|CF311701
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29657533|gb|CB653808.1|CB653808
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|58605333|gb|CK033366.1|CK033366
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
EST: gi|29659233|gb|CB655508.1|CB655508
EST:     TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAG                         GTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC
genomic: TAAATAAAAGAATTCAAGAAGCATACTGTGCTGAACTGTTTCTGACGAAGgtacttatgc ... tatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtgtacaatactatcattaaccattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG
                 cattaac  putative branch site (score: 2)
                  attaaccattttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttatgcagagcattttttaaaaaggaaactgaactcaactttagtgtgtacaatactatcattaaccattttaaactagaaactgcctatactgcagGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT