1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtatgttgtgtttgtatgttataattcaaaacctcctgtagtttctatggtctatctttttttacatttccttcaaagtaatttatcatgctgcaactttcacttttcgtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAGGCGCAATAATAGAGGACTCATTACTCATGGGAGCTGACTACTACGAG
species | Oryza sativa |
transcript | LOC_Os08g25734.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|58606969|gb|CK035002.1|CK035002
genomic: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGGTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|33681770|gb|CF310009.1|CF310009
genomic: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGGTTGTGTTATTAAA AACTGTAAGATACGCCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|86417728|gb|CI031937.1|CI031937
genomic: TGATGCTGATGTGACAGACAGTGTCATTGGTGAAGG-TTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|29612859|gb|CB617872.1|CB617872
genomic: TGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGGTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|38472262|gb|CF956393.1|CF956393
genomic: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGGTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|29671442|gb|CB667717.1|CB667717
genomic: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|86599888|gb|CI256050.1|CI256050
genomic: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: GACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|29660395|gb|CB656670.1|CB656670
genomic: GACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|2797145|gb|AA750439.1|AA750439
genomic: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGGTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAEST: gi|29620180|gb|CB625192.1|CB625192
genomic: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGGTGTGTTATTAAA AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
genomic: TTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTTGTGTTATTAAAgtaagtatgt ... gtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAA
acatttccttcaaagtaatttatcatgctgcaactttcacttttcgtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAGGCGCAATAATAGAGGACTCATTACTCATGGGAGCTGACTACTACGAG
ctttcacttttcgtcc CT-rich tract
ttcaaagtaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatgttgtgtttgtatgttataattcaaaacctcctgtagtttctatggtctatctttttttacatttccttcaaagtaatttatcatgctgcaactttcacttttcgtccttgtagAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAGGCGCAATAATAGAGGACTCATTACTCATGGGAGCTGACTACTACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA