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...ttagatttctaactgtttggaaatgataatttcatgtattctcagtcagccaaactttttttttcatcttctaatatgtttatgttggggaaattttcagGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCT
species | Oryza sativa |
transcript | LOC_Os08g23360.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAG GCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTEST: gi|38473023|gb|CF957155.1|CF957155
genomic: ATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGgtatatatat ... aaattttcagGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTT
EST: ATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAG GCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGEST: gi|29616176|gb|CB621188.1|CB621188
genomic: ATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGgtatatatat ... aaattttcagGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATG
EST: ATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTACCATTGAG GCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTEST: gi|58690879|gb|CK079566.1|CK079566
genomic: ATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGgtatatatat ... aaattttcagGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTT
EST: ATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAG GCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTT
genomic: ATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGgtatatatat ... aaattttcagGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTT
tcagccaaactttttttttcatcttctaatatgtttatgttggggaaattttcagGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCT
ttctaat putative branch site (score: 42)
ttttc putative PPT
tttttttttcatcttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagatttctaactgtttggaaatgataatttcatgtattctcagtcagccaaactttttttttcatcttctaatatgtttatgttggggaaattttcagGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - ctgtttg
- - - - - - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - - - - - - -agccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgttg