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...cattttctatacaaataagttggagatgctttattctatggcaacaatgtagacgcccaatatgatgtctcatgtgctgtcatgcctacaatgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCCACAAGATTAAGAGCCGTCAATGGGCGATTTTCAAAACATCTGCCATAA
species | Oryza sativa |
transcript | LOC_Os08g15040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|89162128|gb|CI103664.1|CI103664
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: TATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|86478438|gb|CI121071.1|CI121071
genomic: TATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|8956150|gb|BE229954.1|BE229954
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|86511016|gb|CI153649.1|CI153649
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|88906338|gb|CI375410.1|CI375410
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAA-GTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|88239417|gb|CI240579.1|CI240579
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|86434337|gb|CI094680.1|CI094680
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|58666564|gb|CK055250.1|CK055250
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGGCGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|86886528|gb|CI322760.1|CI322760
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTCCCATAACGGAATCATTAGAACTCEST: gi|15850648|gb|BI798924.1|BI798924
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTCCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|218486133|gb|FG956315.1|FG956315
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTCGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|87011925|gb|CI283812.1|CI283812
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|27554323|gb|CA998223.1|CA998223
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
genomic: GAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
aatgtagacgcccaatatgatgtctcatgtgctgtcatgcctacaatgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCCACAAGATTAAGAGCCGTCAATGGGCGATTTTCAAAACATCTGCCATAA
aatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttctatacaaataagttggagatgctttattctatggcaacaatgtagacgcccaatatgatgtctcatgtgctgtcatgcctacaatgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCCACAAGATTAAGAGCCGTCAATGGGCGATTTTCAAAACATCTGCCATAA
- - - - - acaaata
- - - - - - - - - - - -agatgct
- - - - - - - - - - - - - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctac