1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaatttagtcaagcatgccattaatggtttctttactctttcttaaaaaatcacatgttcaacatgttaactttgtgcaaccccagGTACTCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAGCGACTCGAAAATTTTTTGAAAGCCACAGATATTTTGGCTTAGAGCCTGA
species | Oryza sativa |
transcript | LOC_Os08g10600.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTGAACGAATTTTGTGCATACAGAAGCTGGCTGCTCAGTCCACTGCATG GTACTCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAEST: gi|27576482|gb|CA999176.1|CA999176
genomic: GCTGAACGAATTTTGTGCATACAGAAGCTGGCTGCTCAGTCCACTG-ATGgtaatttagt ... gcaaccccagGTACTCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAA
EST: AGCTGAACGAATTTTGTGCATACAGAAGCTGGCTGCTCAGTCCACTGATG GTACTCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAGEST: gi|29616664|gb|CB621676.1|CB621676
genomic: AGCTGAACGAATTTTGTGCATACAGAAGCTGGCTGCTCAGTCCACTGATGgtaatttagt ... gcaaccccagGTACTCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAG
EST: AGCTGAACGAATTTTGTGCATACAGAAGCTGGCTGCTCAGTCCACTGATG GTACTCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAG
genomic: AGCTGAACGAATTTTGTGCATACAGAAGCTGGCTGCTCAGTCCACTGATGgtaatttagt ... gcaaccccagGTACTCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAG
tttactctttcttaaaaaatcacatgttcaacatgttaactttgtgcaaccccagGTACTCCACAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAGCGACTCGAAAATTTTTTGAAAGCCACAGATATTTTGGCTTAGAGCCTGA
tgttaac putative branch site (score: 2)
tctttcttaaaaaat TA-rich tract