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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattttactgctaactactaatgttttcttctatataccgtcgtcgcatacatttttgaactaacttatagcttcattcaaatgtctcttttcttcccagTTCTGCAACTATCTGAAAAATTCCGTCTGCACTTTGGCCCCTTCCGTTATGTCATCGCTGGTGTTCTTAAATTTCTATCATTACCTCAATACAGATTTGA

Basic information

species Oryza sativa
transcript LOC_Os08g05650.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27548428|gb|CA766393.2|CA766393
EST:     AATTACTCATTTCGGTTTGACAGCTTCCTACTATGGTTTTGTGGCTGATG                         TTCTGCAACTATCTGAAAAATTCCGCCTGCACTTTGGCCCCTTCCGTTATG
genomic: AATTACTCATTTCGGTTTGACAGCTTCCTACTATGGTTTTGTGGCTGATGgtaagtcttc ... ttcttcccagTTCTGCAACTATCTGAAAAATTCCGTCTGCACTTTGGCCCCTTCCGTTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatacatttttgaactaacttatagcttcattcaaatgtctcttttcttcccagTTCTGCAACTATCTGAAAAATTCCGTCTGCACTTTGGCCCCTTCCGTTATGTCATCGCTGGTGTTCTTAAATTTCTATCATTACCTCAATACAGATTTGA
             aactaac  putative branch site (score: 1)
                                     tgtctcttttcttccc  putative PPT
      atttttgaa  TA-rich tract