1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ttgtaaacttttatgttctttctgctgtctgcctttaaccatgttattctacattcactttttgcttggtacaaattgttgtctgatttttttttgtcagGATGAGTTGCGTCAGCAAAAAGAAGAGGAAATGGATGATTACTGTTCTCAG
species | Oryza sativa |
transcript | LOC_Os08g01920.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAAATTAAGGCGTGGGTTTTCATCTTCTGGATCAGCGAAGCCTACACAG GATGAGTTGCGTCAGCAAAAAGAAGAGGAAATGGATGATTEST: gi|29634911|gb|CB639920.1|CB639920
genomic: TCAAATTAAGGCGTGGGTTTTCATCTTCTGGATCAGCGAAGCCTACACAGgtcagctgcc ... tttttgtcagGATGAGTTGCGTCAGCAAAAAGAAGAGGAAATGGATGATT
EST: TCAAATTAAGGCGTGGGTTTTCATCTTCTGGATCAGCGAAGCCTACACAG GATGAGTTGCGTCAGCAAAAAGAAGAGGAAATGGATGATTACTGTTCTCAG
genomic: TCAAATTAAGGCGTGGGTTTTCATCTTCTGGATCAGCGAAGCCTACACAGgtcagctgcc ... tttttgtcagGATGAGTTGCGTCAGCAAAAAGAAGAGGAAATGGATGATTACTGTTCTCAG
attctacattcactttttgcttggtacaaattgttgtctgatttttttttgtcagGATGAGTTGCGTCAGCAAAAAGAAGAGGAAATGGATGATTACTGTTCTCAG
gtctgat putative branch site (score: 15)
tctgattttttttt CT-rich tract
tctgattttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaaacttttatgttctttctgctgtctgcctttaaccatgttattctacattcactttttgcttggtacaaattgttgtctgatttttttttgtcagGATGAGTTGCGTCAGCAAAAAGAAGAGGAAATGGATGATTACTGTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - -tgttctt
- - - - - - - - - - - tgctgtc
- - - - - - - - - - - - - - -tgccttt
- - - - - - - - - - - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgt