1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattttttaactgtcaagttttcttagctacttaaccaccagcagttcaaaaacaactcgaattctgtttttaatttcccgttgctgatcttaatatgctatttcccgtcttcttcaagtgtccatcttgaaaatttcccattgaatgtgattatttgaatatcttactggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGGCATTGACATTTTCTCAGTGCGCCAAAAGTGTACGAGATGGAGGCAAAG
species | Oryza sativa |
transcript | LOC_Os08g01760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|88907686|gb|CI091084.1|CI091084
genomic: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: AAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|86502042|gb|CI144675.1|CI144675
genomic: AAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|88197083|gb|CI196933.1|CI196933
genomic: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|44674419|gb|CR287853.1|CR287853
genomic: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: CAACCCATACTGTAAATGCTGGAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTEST: gi|58682874|gb|CK071561.1|CK071561
genomic: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACT
EST: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|88837935|gb|CI371513.1|CI371513
genomic: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: GTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTACCTGTGGAAGCACTTGTTAAGEST: gi|86414410|gb|CI068813.1|CI068813
genomic: GTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: AAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|86503463|gb|CI146096.1|CI146096
genomic: AAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|86432655|gb|CI086266.1|CI086266
genomic: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: AAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|88833764|gb|CI077245.1|CI077245
genomic: AAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: CTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|58588843|gb|CF987151.1|CF987151
genomic: CTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|88903524|gb|CI089062.1|CI089062
genomic: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: ATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|94362588|gb|CI052707.1|CI052707
genomic: ATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: GAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGEST: gi|86497826|gb|CI140459.1|CI140459
genomic: GAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
EST: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAG GAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
genomic: CAACCCATACTGTAAATGCTGCAAAAGAAGATGCAGTTGAAAAGATTAAGgtatttttta ... ctggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAG
ccatcttgaaaatttcccattgaatgtgattatttgaatatcttactggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGGCATTGACATTTTCTCAGTGCGCCAAAAGTGTACGAGATGGAGGCAAAG
atcttac putative branch site (score: 65)
tcttact CT-rich tract
attatttgaatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttttaactgtcaagttttcttagctacttaaccaccagcagttcaaaaacaactcgaattctgtttttaatttcccgttgctgatcttaatatgctatttcccgtcttcttcaagtgtccatcttgaaaatttcccattgaatgtgattatttgaatatcttactggctgcagGAAATTACTGATGGGAGGGGTGTGGATGTAGCTGTGGAAGCACTTGGTAAGGCATTGACATTTTCTCAGTGCGCCAAAAGTGTACGAGATGGAGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG