1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgccagtgcctagttatctacttctgattatataactcaaattacttgtattttttgctcatatgaggtggtcattaacaaccagtccttggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGAACCATTTGAAAGTATGATGACTGAGAAA
species | Oryza sativa |
transcript | LOC_Os07g49040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAG GTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCEST: gi|58676993|gb|CK065680.1|CK065680
genomic: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGgtaggctcta ... ggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGC
EST: GCTCTGCAATGTTGGAAGAAAG GTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCEST: gi|86537685|gb|CI177891.1|CI177891
genomic: GCTCTGCAATGTTGGAAGAAAGgtaggctcta ... ggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGC
EST: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAG GTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCEST: gi|89168874|gb|CI020955.1|CI020955
genomic: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGgtaggctcta ... ggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGC
EST: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAG GTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCEST: gi|300215902|gb|HO088528.1|HO088528
genomic: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGgtaggctcta ... ggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGC
EST: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAG GTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCAEST: gi|29671529|gb|CB667804.1|CB667804
genomic: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGgtaggctcta ... ggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCA
EST: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAG GTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGC
genomic: GGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGgtaggctcta ... ggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGC
ttgtattttttgctcatatgaggtggtcattaacaaccagtccttggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGAACCATTTGAAAGTATGATGACTGAGAAA
cattaac putative branch site (score: 10)
attaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgccagtgcctagttatctacttctgattatataactcaaattacttgtattttttgctcatatgaggtggtcattaacaaccagtccttggtcttgcagGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGAACCATTTGAAAGTATGATGACTGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -gtgccta
- - - - - - - - - -acttctg
- - - - - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaacc