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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcacatatagaaatgagacttgctttgatgcagtttttcttgcccattctttgctatggatgaatactggtagagtaaaagctaatcatctgatattacgttatggatttaattaccatttgcagTGTTGATGTTTCTGGGCAACGAGAAATGAGGGACTTCTTCAATGGTATTGTGAGATTGCAGGTATCTGCCACTGTCCACCATGTTATGATACTTCTGTTC

Basic information

species Oryza sativa
transcript LOC_Os07g44070.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g44070.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G160569_T03 (Zea mays), 3'ss of exon 2
gtaagttcacatatagaaatgagacttgctttgatgcagtttttcttgcccattctttgctatggatgaatactggtagagtaaaagct--aatcatctgatattacgttatggatttaattaccatttgcagTGTTGATGTTTCTGGGCAACGAGAAATGAGGGACTTCTTCAATGGTATTGTGAGATTGCAGGTATCTGCCACTGTCCACCATGTTATGATACTTCTGTTC
||| | ||||| | | |||||| || |  || |||    | | |    |  | || ||  | ||     ||  ||  |  || |   ||  ||   | |  |  |  |  || | |    | | |||||||||||||||||||||||| |  || ||||||||   ||| |||||||| |||||||||||||||                                       
gtatgctcacacaaataaatgaaacct-tttcgatattttatcttaatcaaagtcattatt-tgctaccatgatgaaattgtgatcactccaagtgtatattggtgtga-attggtcctttaatcatttgcagTGTTGATGTTTCTGGCCGTCGGGAAATGAGATCCTTTTTCAATGGCATTGTGAGATTGCAG---------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagtaaaagctaatcatctgatattacgttatggatttaattaccatttgcagTGTTGATGTTTCTGGGCAACGAGAAATGAGGGACTTCTTCAATGGTATTGTGAGATTGCAGGTATCTGCCACTGTCCACCATGTTATGATACTTCTGTTC
                              ttatggatttaatta  TA-rich tract