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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttcataagaaaataacacactaaagaaccttttagctcttgtttttgtttctgtgaaaaattccatttccctctctcattttcttttgttcttttcagCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACT

Basic information

species Oryza sativa
transcript LOC_Os07g37790.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52340.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G045331_T01 (Zea mays), 3'ss of exon 5
-----------------------------------tcttcataaga-aaataacacactaaagaaccttttagctcttgttt--ttgtttctgtgaaaaattccatttccctctctcattttcttttg-ttcttttcagCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACT
                                   |   ||||  | ||||     | |||     | |    ||| |   |  | || ||  | |   ||  ||   |  |   | |     |||   ||||||||||||||||||||  ||||||||||||| ||| | || ||||||||||| || ||||||||||| |||||  | || || ||| |||| ||||| ||||| ||
gtaacaagccatgccttgcataatatttgtttaaatgcacatataataaatgtattattaacctgtcctccgtctccttcctaatagtctcgatcatgtatgtcacaactattattgacagaatttaaattcttttcagCTCATATTCCATTGTACCTGTACCCTTTCCTCAACACTACCAGCAAAACGAGACCTTTTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCT

upper sequence: LOC_Os04g52340.1 (Oryza sativa), 3'ss of exon 6
lower sequence: AT3G20800.1 (Arabidopsis thaliana), 3'ss of exon 4
---tcttcataagaaaataacacactaaagaaccttttagctcttgtttttgtttctgtgaaaaattccatttccctctctcattttcttttgttcttttcagCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACT
   | || ||   | | | |    |       |  ||||  || ||      |     |||  ||||   ||    |  ||  | ||| ||  || |   |||||||||| ||  ||||||| || || ||| | ||||| || || ||| | |||||||| |||||| |||| || || ||||| |||||||||||||||||
atctgtttattgtatatttat-tgcatggtttcagtttatttcgtgaagcaatacaactgatgaattt-gttgttatgccttttcttcgttc-ttgtgcacagCTCATATCCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttctgtgaaaaattccatttccctctctcattttcttttgttcttttcagCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACT
                 ttccatttccctctct  CT-rich tract
                                  attttctttt  TA-rich tract