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...attgtgcttatctttctccatatgagaaacatttttgtttcttttaaaattggcttatgatttttttgacatcctagttcatgttgccatattttttcagTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAAGGCAACAAATCTTTCTGCAGAACAG
species | Oryza sativa |
transcript | LOC_Os07g37610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAG TAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAEST: gi|58662796|gb|CK051482.1|CK051482
genomic: GGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAGgtatatatct ... attttttcagTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAA
EST: GGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAG TAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAEST: gi|58668424|gb|CK057110.1|CK057110
genomic: GGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAGgtatatatct ... attttttcagTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAA
EST: GGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAG TAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAEST: gi|29681679|gb|CB677954.1|CB677954
genomic: GGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAGgtatatatct ... attttttcagTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAA
EST: GGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAG TAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAA
genomic: GGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAGgtatatatct ... attttttcagTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAA
aaaattggcttatgatttttttgacatcctagttcatgttgccatattttttcagTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAAGGCAACAAATCTTTCTGCAGAACAG
ttttgac putative branch site (score: 24)
tattttttc putative PPT
ttatgatttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtgcttatctttctccatatgagaaacatttttgtttcttttaaaattggcttatgatttttttgacatcctagttcatgttgccatattttttcagTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAAGGCAACAAATCTTTCTGCAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
attgtgc
- - - - - - - - -ccatatg
- - - - - - - - - - - - agaaaca
- - - - - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc