1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatgttgcctgcctctagcatataattcatctatcaccattgagttgtttcatttgattcttatcctttgtcacttatcctgttgaagGTAGAAGCAGAAAAGTTATTTCATTTGAGGTTAGCTGCTATACTTGATGATGTTGAAGCTGAG
species | Oryza sativa |
transcript | LOC_Os07g32460.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGAATCTCAGCAGCAAAGGATAACTCTTCAGCGCCTGGTTGGCATG GTAGAAGCAGAAAAGTTATTTCATTTGAGGTTAGCTGCTATACTTGATGATEST: gi|86827427|gb|CI272824.1|CI272824
genomic: CTGTTGAATCTCAGCAGCAAAGGATAACTCTTCAGCGCCTGGTTGGCATGgtaatgttgc ... cctgttgaagGTAGAAGCAGAAAAGTTATTTCATTTGAGGTTAGCTGCTATACTTGATGAT
EST: CTGTTGAATCTCAGCAGCAAAGGATAACTCTTCAGCGCCTGGTTGGCATG GTAGAAGCAGAAAAGTTATTTCATTTGAGGTTAGCTGCTATACTTGATGAT
genomic: CTGTTGAATCTCAGCAGCAAAGGATAACTCTTCAGCGCCTGGTTGGCATGgtaatgttgc ... cctgttgaagGTAGAAGCAGAAAAGTTATTTCATTTGAGGTTAGCTGCTATACTTGATGAT
tcaccattgagttgtttcatttgattcttatcctttgtcacttatcctgttgaagGTAGAAGCAGAAAAGTTATTTCATTTGAGGTTAGCTGCTATACTTGATGATGTTGAAGCTGAG
atttgat putative branch site (score: 4)
cttatcct putative PPT
tttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttgcctgcctctagcatataattcatctatcaccattgagttgtttcatttgattcttatcctttgtcacttatcctgttgaagGTAGAAGCAGAAAAGTTATTTCATTTGAGGTTAGCTGCTATACTTGATGATGTTGAAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA