1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tataaagaatttttacactcatgccacagattagcttagtggctgcaatcacgagccctcccaaacacagtctctgacatctgcatttcacctgtttcagGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACT
species | Oryza sativa |
transcript | LOC_Os07g30800.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCT GTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCEST: gi|88383263|gb|CI540676.1|CI540676
genomic: AACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTgtaagttact ... cctgtttcagGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATC
EST: AACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCT GTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATC
genomic: AACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTgtaagttact ... cctgtttcagGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATC
caatcacgagccctcccaaacacagtctctgacatctgcatttcacctgtttcagGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACT
ctctgac putative branch site (score: 6)
tttcacct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaagaatttttacactcatgccacagattagcttagtggctgcaatcacgagccctcccaaacacagtctctgacatctgcatttcacctgtttcagGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-ataaagaa
- - - - - - - - - -catgcca
- - - - - - - - - - - - - - - - - - - gtggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atctgca