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...gttgaaatggttgagaaaacgattgtgaaatggttaaatataaattatgataaagataagaaaactcctggttcttatgtctgttctcatatggtcttagAAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTG
species | Oryza sativa |
transcript | LOC_Os07g26610.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTATGCATCCGATCTTGTGAAAGCAGTTCGTAAATCTGCTGGAAACAAAT AAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGEST: gi|33793170|gb|CF322466.1|CF322466
genomic: TTATGCATCCGATCTTGTGAAAGCAGTTCGTAAATCTGCTGGAAACAAAGgtacattttt ... atggtcttagAAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAG
EST: TTATGCATCCGATCTTGTGAAAGCAGTTCGTAAATCTGCTGGAAACAAAG AAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGEST: gi|29660678|gb|CB656953.1|CB656953
genomic: TTATGCATCCGATCTTGTGAAAGCAGTTCGTAAATCTGCTGGAAACAAAGgtacattttt ... atggtcttagAAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGG
EST: TTATGCATCCGATCTTGTGAAAGCAGTTCGTAAATCTGCTGGAAACAAAG AAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAG
genomic: TTATGCATCCGATCTTGTGAAAGCAGTTCGTAAATCTGCTGGAAACAAAGgtacattttt ... atggtcttagAAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAG
tatgataaagataagaaaactcctggttcttatgtctgttctcatatggtcttagAAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTG
taaagataagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaaatggttgagaaaacgattgtgaaatggttaaatataaattatgataaagataagaaaactcctggttcttatgtctgttctcatatggtcttagAAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - atggttg
- - - - - - -agaaaacg
- - - - - - - - - - - - - - - - - - - - - - ttatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttatg