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gttggttactgttactagctaggtatacttgttatccatcattctgaattaccaagactaattgtttgcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTCAGTACTGTTGATCCCTTGAAGGAACCTCCTTTGGTCACAGCAAACACT
species | Oryza sativa |
transcript | LOC_Os07g24190.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTEST: gi|58657578|gb|CK046258.1|CK046258
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTEST: gi|29681197|gb|CB677472.1|CB677472
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTEST: gi|29680102|gb|CB676377.1|CB676377
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTEST: gi|29624917|gb|CB629928.1|CB629928
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: ACCTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTEST: gi|58693391|gb|CK082078.1|CK082078
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTEST: gi|29635077|gb|CB640086.1|CB640086
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: GATCGATTGACATTGAG GTGTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTEST: gi|29681223|gb|CB677498.1|CB677498
genomic: GATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTEST: gi|29632077|gb|CB637086.1|CB637086
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: GATCGATTGACATTGAG GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
genomic: GATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
gtatacttgttatccatcattctgaattaccaagactaattgtttgcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTCAGTACTGTTGATCCCTTGAAGGAACCTCCTTTGGTCACAGCAAACACT
gactaat putative branch site (score: 2)
tttgctttt putative PPT
taattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttactgttactagctaggtatacttgttatccatcattctgaattaccaagactaattgtttgcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGTCAGTACTGTTGATCCCTTGAAGGAACCTCCTTTGGTCACAGCAAACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA