1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...catgttggaattactgaccttgtctcaaatcgtgtccatcctctgttccccgcttctctttccacaatgctaacaaagtggcatattctttttggtgcagGTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACTCCTTGTGCTAAAGACTTTGTACAAAAGTTGCTTGTTAAGGATCCCCGTG
species | Oryza sativa |
transcript | LOC_Os07g22710.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAGACGACCTTTCTGGGACAAAACTGAAGATGGAATATTTAAAGAG GTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACTEST: gi|58682948|gb|CK071635.1|CK071635
genomic: GTGGAAGACGACCTTTCTGGGACAAAACTGAAGATGGAATATTTAAAGAGgtcattttgc ... tttggtgcagGTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACT
EST: GTGGAAGACGACCTTTCTGGGACAAAACTGAAGATGGAATATTTAAAGAG GTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACTEST: gi|58602510|gb|CK013038.1|CK013038
genomic: GTGGAAGACGACCTTTCTGGGACAAAACTGAAGATGGAATATTTAAAGAGgtcattttgc ... tttggtgcagGTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACT
EST: TTTCTGGGACAAAACTGAAGATGGAATATTTAAAGAG GTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACT
genomic: TTTCTGGGACAAAACTGAAGATGGAATATTTAAAGAGgtcattttgc ... tttggtgcagGTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACT
ttccccgcttctctttccacaatgctaacaaagtggcatattctttttggtgcagGTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACTCCTTGTGCTAAAGACTTTGTACAAAAGTTGCTTGTTAAGGATCCCCGTG
tgctaac putative branch site (score: 1)
tattcttttt putative PPT
atattcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttggaattactgaccttgtctcaaatcgtgtccatcctctgttccccgcttctctttccacaatgctaacaaagtggcatattctttttggtgcagGTGTTGAAAAACAAGCCAGATTTTCGTCGCAAGCCCTGGCCAAATATCACTCCTTGTGCTAAAGACTTTGTACAAAAGTTGCTTGTTAAGGATCCCCGTG
catgttg
- - - - - ttactga
- - - - - - - - - - - - - - - - -gtccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcata