1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatagtttctcttttcttatctcttgttaatatctgattgctaatgcggtaatgctgaccttccgtatgtggtatgccaccttgttgtagGTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATTGTTGAAGTATTGGATGACAGGTCAAGGGATTCAAGATTAGTTGCTTTGC
species | Oryza sativa |
transcript | LOC_Os07g20580.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGTCCACCAGCTAGCCCAAGAGTTTATGGATCCAAATCCAATAAAG GTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATTEST: gi|218482943|gb|FG953467.1|FG953467
genomic: CTGCTGTCCACCAGCTAGCCCAAGAGTTTATGGATCCAAATCCAATAAAGgtatagtttc ... cttgttgtagGTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATT
EST: CCAGCTAGCCCAAGAG-TTATGGATCCAAATCCAATAAAG GTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATTEST: gi|58690308|gb|CK078995.1|CK078995
genomic: CCAGCTAGCCCAAGAGTTTATGGATCCAAATCCAATAAAGgtatagtttc ... cttgttgtagGTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATT
EST: CTGCTGTCCACCAGCTAGCCCAAGAGTTTATGGATCCAAATCCAATAAAG GTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATT
genomic: CTGCTGTCCACCAGCTAGCCCAAGAGTTTATGGATCCAAATCCAATAAAGgtatagtttc ... cttgttgtagGTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATT
gattgctaatgcggtaatgctgaccttccgtatgtggtatgccaccttgttgtagGTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATTGTTGAAGTATTGGATGACAGGTCAAGGGATTCAAGATTAGTTGCTTTGC
tgctgac putative branch site (score: 23)
ccacctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagtttctcttttcttatctcttgttaatatctgattgctaatgcggtaatgctgaccttccgtatgtggtatgccaccttgttgtagGTTGTTATTGGATCAGAAGATCTTGCTGCTAACCATGATGTGATGCAAATTGTTGAAGTATTGGATGACAGGTCAAGGGATTCAAGATTAGTTGCTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG