1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtcattgctacaaagtattttcttttcatttgttattgtttcacacttattctttgacaaaatacgttatcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTT
species | Oryza sativa |
transcript | LOC_Os07g19470.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATT GTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCEST: gi|163928829|gb|EG709732.1|EG709732
genomic: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTgtgagtcatt ... tcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTC
EST: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATT GTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCEST: gi|88214998|gb|CI214847.1|CI214847
genomic: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTgtgagtcatt ... tcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTC
EST: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATT GTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCEST: gi|88970471|gb|CI383973.1|CI383973
genomic: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTgtgagtcatt ... tcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTC
EST: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATT GTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCEST: gi|88322733|gb|CI545439.1|CI545439
genomic: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTgtgagtcatt ... tcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTC
EST: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATT GTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCEST: gi|86542020|gb|CI182226.1|CI182226
genomic: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTgtgagtcatt ... tcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTC
EST: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATT GTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTC
genomic: GTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTgtgagtcatt ... tcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTC
ttcatttgttattgtttcacacttattctttgacaaaatacgttatcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTT
ctttgac putative branch site (score: 5)
tcttattt putative PPT
ttatcttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcattgctacaaagtattttcttttcatttgttattgtttcacacttattctttgacaaaatacgttatcttatttagGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG