1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatggaaagtttgaaatgaggctttttctctgcagcttcactttgtatcatatattcatatgatctgctcatctccgttctaatctagcttgtttgcaatggaagcgttctataatttcttcaagatagaattttgtatttttagtctaacaaatttgggtctcttggaacagGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGCAGGACAGTTAAATCAATCTTTTGGATCTACTCCTTTATCTTCACATGCACCAACAAGTA
species | Oryza sativa |
transcript | LOC_Os07g14580.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGT GGAGCTATAAATGTTGGCAGTGCCTCCGGTTTATCAGTTGCAGGACAGTTAEST: gi|58690454|gb|CK079141.1|CK079141
genomic: TACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGTgtatggaaag ... cttggaacagGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGCAGGACAGTTA
EST: TACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGT GGAGCTATAAATGTTGGCAGTGCCTCCGGTTTATCAGTTGCAGGACAGTTAEST: gi|66923810|gb|CX110658.1|CX110658
genomic: TACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGTgtatggaaag ... cttggaacagGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGCAGGACAGTTA
EST: TACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGT GGAGCTATAAATGTTGGCAGTGCCTCCGGTTTATCAGTTGCAGGACAGTTA
genomic: TACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGTgtatggaaag ... cttggaacagGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGCAGGACAGTTA
cttcaagatagaattttgtatttttagtctaacaaatttgggtctcttggaacagGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGCAGGACAGTTAAATCAATCTTTTGGATCTACTCCTTTATCTTCACATGCACCAACAAGTA
gtctaac putative branch site (score: 13)
tctctt putative PPT
aattttgtatttttag TA-rich tract