Skip to another splice site:
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 5'  3'   		6  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgctcaggccatacatgctgcgagtatatgccagttcatgctatgtgctttttaactcattaaagctatggttgacctaagctttcgacaatgcgattgaatctaattaatcatttattcatgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCTGCTAGCAAAGAACATTGTGGAGCCGGCTCAAGCAGCACAACAGGCAGCT

Basic information

species Oryza sativa
transcript LOC_Os07g12110.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10930566|gb|AU160840.1|AU160840
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88842384|gb|CI081640.1|CI081640
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89179941|gb|CI044220.1|CI044220
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89168223|gb|CI109427.1|CI109427
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|3763416|gb|AU030168.1|AU030168
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86900441|gb|CI298276.1|CI298276
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86858778|gb|CI275039.1|CI275039
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89193464|gb|CI050762.1|CI050762
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|2311303|gb|C27458.1|C27458
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88964659|gb|CI070005.1|CI070005
EST:     ATTGATTCAGTGTCTGGAACTCTAATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|22305110|gb|BQ906332.1|BQ906332
EST:     ATTGATTCAGTGTCTGGTACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCACGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCC
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCA-GGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCC
EST: gi|58602782|gb|CK013310.1|CK013310
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTT
EST: gi|86258563|gb|CI064916.1|CI064916
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88955538|gb|CI091630.1|CI091630
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86434782|gb|CI106015.1|CI106015
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88987661|gb|CI034524.1|CI034524
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCCATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88268891|gb|CI377795.1|CI377795
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|33653757|gb|CF276371.1|CF276371
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88420262|gb|CI559508.1|CI559508
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|29630665|gb|CB635674.1|CB635674
EST:     ATTGATTCAGTGTCTGGTACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88850324|gb|CI091817.1|CI091817
EST:     ATTGATTCAGTGTCTGGAACTCTNATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86852007|gb|CI317767.1|CI317767
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89183444|gb|CI046009.1|CI046009
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88955951|gb|CI092239.1|CI092239
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86258481|gb|CI064834.1|CI064834
EST:     ATTGATTCAGTGTCTGGAACTCTGATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88447986|gb|CI538989.1|CI538989
EST:     TTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: TTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88993549|gb|CI110370.1|CI110370
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89193445|gb|CI050743.1|CI050743
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|29688864|gb|CB685139.1|CB685139
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88834744|gb|CI370047.1|CI370047
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCA-GTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86602856|gb|CI357220.1|CI357220
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAATAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86413625|gb|CI019210.1|CI019210
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|29682306|gb|CB678581.1|CB678581
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGCCGCCCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|58676370|gb|CK065057.1|CK065057
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|13165342|gb|AU174139.1|AU174139
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89167546|gb|CI108947.1|CI108947
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88903377|gb|CI088915.1|CI088915
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88253966|gb|CI352592.1|CI352592
EST:     ATTGGTTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88989818|gb|CI018696.1|CI018696
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89196806|gb|CI402560.1|CI402560
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86871731|gb|CI331108.1|CI331108
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAGTCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88829372|gb|CI074242.1|CI074242
EST:     ATTGATTCAGTGTCTGGAACTCTNATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88254036|gb|CI352662.1|CI352662
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89178973|gb|CI043478.1|CI043478
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|29617590|gb|CB622602.1|CB622602
EST:     ATTGATTCAGTGTCTGGTACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88416161|gb|CI538317.1|CI538317
EST:     CAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: CAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89194973|gb|CI051086.1|CI051086
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|12405135|gb|AU166736.1|AU166736
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|29628321|gb|CB633332.1|CB633332
EST:     ATTGATTCAGTGTCTGGTACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88830613|gb|CI078057.1|CI078057
EST:     ATTGATTCAGTGTCTGGAACTCTAATCATGACGACCAATCATGTTAAAAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88851150|gb|CI373908.1|CI373908
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|33693926|gb|CF322165.1|CF322165
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88843120|gb|CI372020.1|CI372020
EST:     ATTGATTCAGTGTGTGGAACTGTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAA-AATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86489741|gb|CI132374.1|CI132374
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88264995|gb|CI368769.1|CI368769
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86486114|gb|CI128747.1|CI128747
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86870378|gb|CI319484.1|CI319484
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86427831|gb|CI072928.1|CI072928
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|89168219|gb|CI109423.1|CI109423
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88955382|gb|CI091474.1|CI091474
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|86833639|gb|CI337213.1|CI337213
EST:     ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT
EST: gi|88267844|gb|CI379977.1|CI379977
EST:     ATTGATTCAGTGTCT-GAACTCTTATCATGACGACCAATCATGTTAACAT                         CCATTAGCAGGTTATCGAAACCTTAAAGAATCTTAACATGCGCACTTTCCT
genomic: ATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 65 (downstream exon)
Score: 37

CAGAATTGTGGATTATGAACTTAGTTAGGAATTCAAAGCTCGACGCCAAGATTGATTCAGTGTCTGGAACTCTTATCATGACGACCAATCATGTTAACATgtaagttgct ... catgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCTGCTAGCAAAGAACATTGTGGAGCCGGCTCAAGCAGCACAACAGGCAGCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctaagctttcgacaatgcgattgaatctaattaatcatttattcatgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCTGCTAGCAAAGAACATTGTGGAGCCGGCTCAAGCAGCACAACAGGCAGCT
                              aattaat  putative branch site (score: 37)
                                       tttattc  putative PPT
                     attgaatctaattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttgctcaggccatacatgctgcgagtatatgccagttcatgctatgtgctttttaactcattaaagctatggttgacctaagctttcgacaatgcgattgaatctaattaatcatttattcatgttgcagCCATGAGCAGGTTATCGAAAGCTTAAAGAATCTTAACATGCGGACTTTCCTGCTAGCAAAGAACATTGTGGAGCCGGCTCAAGCAGCACAACAGGCAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT