1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttacttttttttctctgtagcagggtcctcaaagaagctgcttctacagggagtgtggacatgcaaatctgaactaacatttttctgcatctttgtgcagTGTCCTCCCGGGTGACGATTGGTTCATGGATGTTTCTCAGGAGGTTGTCAGCATGATTAGTGGAAAGGGTAGAGCTGCCAATGGAGACAGGGAGATAAAC
species | Oryza sativa |
transcript | LOC_Os07g10110.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTGATAGAGCAATGGCTGCATTTTCAGCTACTGGAATGAACCCTGACAG TGTCCTCCCGGGTGACGATTGGTTCATGGATGTTTCTCAGGAGGTTGTCAGEST: gi|58668077|gb|CK056763.1|CK056763
genomic: ATTGATAGAGCAATGGCTGCATTTTCAGCTACTGGAATGAACCCTGACAGgtactacact ... ctttgtgcagTGTCCTCCCGGGTGACGATTGGTTCATGGATGTTTCTCAGGAGGTTGTCAG
EST: ATTGATAGAGCAATGGCTGCATTTTCAGCTACTGGAATGAACCCTGACAG TGTCCTCCCGGGTGACGATTGGTTCATGGATGTTTCTCAGGAGGTTGTCAG
genomic: ATTGATAGAGCAATGGCTGCATTTTCAGCTACTGGAATGAACCCTGACAGgtactacact ... ctttgtgcagTGTCCTCCCGGGTGACGATTGGTTCATGGATGTTTCTCAGGAGGTTGTCAG
acagggagtgtggacatgcaaatctgaactaacatttttctgcatctttgtgcagTGTCCTCCCGGGTGACGATTGGTTCATGGATGTTTCTCAGGAGGTTGTCAGCATGATTAGTGGAAAGGGTAGAGCTGCCAATGGAGACAGGGAGATAAAC
aactaac putative branch site (score: 6)
tttttctgcatcttt CT-rich tract
taacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacttttttttctctgtagcagggtcctcaaagaagctgcttctacagggagtgtggacatgcaaatctgaactaacatttttctgcatctttgtgcagTGTCCTCCCGGGTGACGATTGGTTCATGGATGTTTCTCAGGAGGTTGTCAGCATGATTAGTGGAAAGGGTAGAGCTGCCAATGGAGACAGGGAGATAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - ctgtagc
- - - - - - - - - - - - - - -caaagaag
- - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa