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gtaaatttactggcgatttgtttttttttcctggttctgtagagtgcataaagccatgaatagttgttcatccactatgcttgctaaattctacagAGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG
species | Oryza sativa |
transcript | LOC_Os07g07000.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGAACAGACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTGCAGEST: gi|58596499|gb|CK007027.1|CK007027
genomic: GAGAACAGACTACTGGgtaaatttac ... aattctacagAGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG
EST: GCGGTAGATCGATCAAGAGAACAGACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAGEST: gi|58656531|gb|CK045211.1|CK045211
genomic: GCGGTAGATCGATCAAGAGAACAGACTACTGGgtaaatttac ... aattctacagAGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG
EST: GGATGTGGGAAAGGATCTGCGGTAGATCGATCAAGAGAACAGACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAGEST: gi|163926272|gb|EG711848.1|EG711848
genomic: GGATGTGGGAAAGGATCTGCGGTAGATCGATCAAGAGAACAGACTACTGGgtaaatttac ... aattctacagAGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG
EST: GGATGTGGGAAAGGATCTGCGGTAGATCGATCAAGAGAACAGACTACTGG AGCAGTGAAAAAGAAATTGAAGGEST: gi|58679994|gb|CK068681.1|CK068681
genomic: GGATGTGGGAAAGGATCTGCGGTAGATCGATCAAGAGAACAGACTACTGGgtaaatttac ... aattctacagAGCAGTGAAAAAGAAATTGAAGG
EST: GGATGTGGGAAAGGATCTGCGGTAGATCGATCAAGAGAACAGACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG
genomic: GGATGTGGGAAAGGATCTGCGGTAGATCGATCAAGAGAACAGACTACTGGgtaaatttac ... aattctacagAGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG
gagtgcataaagccatgaatagttgttcatccactatgcttgctaaattctacagAGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG
tgctaaa putative branch site (score: 43)
taaattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttactggcgatttgtttttttttcctggttctgtagagtgcataaagccatgaatagttgttcatccactatgcttgctaaattctacagAGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA