1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgctctatataaccattcctttttttattatttttcatgctattgtagagattgaagtgccactaactagccatttcaattttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC
species | Oryza sativa |
transcript | LOC_Os07g01930.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|88261690|gb|CI365266.1|CI365266
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|88288335|gb|CI515479.1|CI515479
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|10794608|gb|AU108574.1|AU108574
genomic: GTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|218490073|gb|FG948574.1|FG948574
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAA-AAAATGATEST: gi|66917010|gb|CX103858.1|CX103858
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|33680136|gb|CF308375.1|CF308375
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|24468825|gb|CA305774.1|CA305774
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GAGCATGTGAAGGTTCACCTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|88304282|gb|CI515555.1|CI515555
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: TGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|33680135|gb|CF308374.1|CF308374
genomic: TGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATEST: gi|11443010|gb|BF430897.1|BF430897
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
EST: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATG GATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
genomic: GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctcta ... ttttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGAT
tcatgctattgtagagattgaagtgccactaactagccatttcaattttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC
cactaac putative branch site (score: 8)
ttttgtcc putative PPT
atttcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctctatataaccattcctttttttattatttttcatgctattgtagagattgaagtgccactaactagccatttcaattttgtccagGATGTAAATTATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA