1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agtgcacaataatttagctgaattctccaagaaagagttccgaatctgtaccttaaatttgctgccatacgttgtacacagctttattatttatctgcagATCTGTTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAATGAG
species | Oryza sativa |
transcript | LOC_Os07g01490.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCGAGTATCAATGAAGTTTCTTCTCTCCTCAAGCGGGCTGCTCAGAGCAG ATCTGTTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGT
genomic: TCGAGTATCAATGAAGTTTCTTCTCTCCTCAAGCGGGCTGCTCAGAGCAGgttacactct ... ttatctgcagATCTGTTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGT
ctgtaccttaaatttgctgccatacgttgtacacagctttattatttatctgcagATCTGTTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAATGAG
tttatct CT-rich tract
tttattatttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgcacaataatttagctgaattctccaagaaagagttccgaatctgtaccttaaatttgctgccatacgttgtacacagctttattatttatctgcagATCTGTTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- tgcacaa
- - - - - - - - gctgaat
- - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - -ctgtacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtacac