1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctaccttttgtgatcctagtgtctgaggaaaacctttccttccattctttactggcatcctatttcacttctcttctgattgcctttcctcttttccagGACTGTATCAACCGGATCATTACACTTGAAGGCATGG
species | Oryza sativa |
transcript | LOC_Os07g01320.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAACACAG GACTGTATCAACCGGATCATTACACTTGAAGGCATGGEST: gi|88958640|gb|CI096156.1|CI096156
genomic: AGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAACACAGgtaattaaag ... tcttttccagGACTGTATCAACCGGATCATTACACTTGAAGGCATGG
EST: CCGCAGAGTTCAGGATGAGAACACAG GACTGTATCAACCGGATCATTACACTTGAAGGCATGGEST: gi|29687912|gb|CB684187.1|CB684187
genomic: CCGCAGAGTTCAGGATGAGAACACAGgtaattaaag ... tcttttccagGACTGTATCAACCGGATCATTACACTTGAAGGCATGG
EST: AGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAACACAG GACTGTATCAACCGGATCATTACACTTGAAGGCATGG
genomic: AGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAACACAGgtaattaaag ... tcttttccagGACTGTATCAACCGGATCATTACACTTGAAGGCATGG
ttctttactggcatcctatttcacttctcttctgattgcctttcctcttttccagGACTGTATCAACCGGATCATTACACTTGAAGGCATGG
ttctgat putative branch site (score: 4)
tcctatttcacttctc CT-rich tract
tatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaccttttgtgatcctagtgtctgaggaaaacctttccttccattctttactggcatcctatttcacttctcttctgattgcctttcctcttttccagGACTGTATCAACCGGATCATTACACTTGAAGGCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - ttgtgat
- - - - - - - - - -gtgtctg
- - - - - - - - - - - - - aggaaaa
- - - - - - - - - - - - - - - - - - - - -tccattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggcatcc