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gtaagacaccactgaaatacagcggctacatattgtgtttttggttcatcttcttttccttcactggcatgacaacctacttcatgttctgctgttgcactttttctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACATGGAATGAACCCCTGGGCCGTGGAACTGAAATAAGACTGCACCTCCGA
species | Oryza sativa |
transcript | LOC_Os06g50300.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACEST: gi|86894758|gb|CI310162.1|CI310162
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACEST: gi|702048|gb|D48339.1|D48339
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACEST: gi|29635203|gb|CB640212.1|CB640212
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACEST: gi|5803546|gb|AI978516.1|AI978516
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCACGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACEST: gi|29633964|gb|CB638973.1|CB638973
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACEST: gi|29622518|gb|CB627529.1|CB627529
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCACGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACEST: gi|569681|gb|D40530.1|D40530
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACEST: gi|571725|gb|D41236.1|D41236
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
EST: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACA GCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
genomic: TTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacacc ... tctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATAC
ttcactggcatgacaacctacttcatgttctgctgttgcactttttctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACATGGAATGAACCCCTGGGCCGTGGAACTGAAATAAGACTGCACCTCCGA
ttgcactttttctct CT-rich tract
acttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaccactgaaatacagcggctacatattgtgtttttggttcatcttcttttccttcactggcatgacaacctacttcatgttctgctgttgcactttttctctgatagGCATGTCTGGGAGTCCAAAGCTGATGGATCATTCGCTATCTCTGAGGATACATGGAATGAACCCCTGGGCCGTGGAACTGAAATAAGACTGCACCTCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA