1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtaaagtggccttcatgtgtgggctctgttatctcactgtcgggcattaacagggtttgtctgatttgctactgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCAAGTACTGCATAGGTACCATTGTTTCGATATCAGCTGTTGGACTCGCCG
species | Oryza sativa |
transcript | LOC_Os06g49890.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG GAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCEST: gi|86825688|gb|CI361828.1|CI361828
genomic: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaag ... ctgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
EST: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG GAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCEST: gi|88476993|gb|CI414264.1|CI414264
genomic: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaag ... ctgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
EST: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG GAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCEST: gi|44665000|gb|CR278434.1|CR278434
genomic: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaag ... ctgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
EST: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG GAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
genomic: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaag ... ctgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
tgttatctcactgtcgggcattaacagggtttgtctgatttgctactgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCAAGTACTGCATAGGTACCATTGTTTCGATATCAGCTGTTGGACTCGCCG
attaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaaagtggccttcatgtgtgggctctgttatctcactgtcgggcattaacagggtttgtctgatttgctactgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCAAGTACTGCATAGGTACCATTGTTTCGATATCAGCTGTTGGACTCGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT