Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattaacaaaagaactggaaacgtgtttttttttgttattttggtgcagagatttttccaaaatgactgatcttaggcttggttttgtgtttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATTGATTACTTGCGGCAAGACAGCTGTTCTTCTCTGATGATGGGACCCAATG

Basic information

species Oryza sativa
transcript LOC_Os06g49500.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89167003|gb|CI104289.1|CI104289
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATT-AA-                         -AGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86904719|gb|CI321627.1|CI321627
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86896857|gb|CI317363.1|CI317363
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAG-AACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGA-CTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29678228|gb|CB674503.1|CB674503
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29661366|gb|CB657641.1|CB657641
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTTTAGGCCTGGGAACTCAATTTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86862993|gb|CI331786.1|CI331786
EST:     TTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCA-GTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29658975|gb|CB655250.1|CB655250
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTTTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86600541|gb|CI356298.1|CI356298
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86484408|gb|CI127041.1|CI127041
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88297286|gb|CI545376.1|CI545376
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88470979|gb|CI408250.1|CI408250
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATT-AA-                         -AGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88253019|gb|CI351645.1|CI351645
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|87032053|gb|CI362133.1|CI362133
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29662187|gb|CB658462.1|CB658462
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         --G-TTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86873152|gb|CI328532.1|CI328532
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86874601|gb|CI318160.1|CI318160
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|18386080|gb|BM419279.1|BM419279
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88989732|gb|CI107419.1|CI107419
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         --G-TTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|58691892|gb|CK080579.1|CK080579
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29661367|gb|CB657642.1|CB657642
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTTTTTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88256880|gb|CI354661.1|CI354661
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86879755|gb|CI339911.1|CI339911
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTGTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|89188692|gb|CI115941.1|CI115941
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAGTCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86497205|gb|CI139838.1|CI139838
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATT-AA-                         -AGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29666649|gb|CB662924.1|CB662924
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         --G-TTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29646236|gb|CB651243.1|CB651243
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         --G-TTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86862037|gb|CI330649.1|CI330649
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATT-AA-                         -AGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29617902|gb|CB622914.1|CB622914
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         --G-TTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29680182|gb|CB676457.1|CB676457
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29637489|gb|CB642498.1|CB642498
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29617864|gb|CB622876.1|CB622876
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         --G-TTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88443326|gb|CI549484.1|CI549484
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86860641|gb|CI324919.1|CI324919
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86893567|gb|CI314739.1|CI314739
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATT-AA-                         -AGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29660872|gb|CB657147.1|CB657147
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTTTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86868776|gb|CI333153.1|CI333153
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86867424|gb|CI337869.1|CI337869
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88901915|gb|CI374523.1|CI374523
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88319693|gb|CI520736.1|CI520736
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29633237|gb|CB638246.1|CB638246
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         --G-TTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29633896|gb|CB638905.1|CB638905
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29666650|gb|CB662925.1|CB662925
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         --G-TTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86844478|gb|CI338538.1|CI338538
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACACCTTCACTGATTAAAC                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86504892|gb|CI147525.1|CI147525
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29639383|gb|CB644392.1|CB644392
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86862937|gb|CI331746.1|CI331746
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATT-AA-                         -AGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29624190|gb|CB629201.1|CB629201
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|86853972|gb|CI329418.1|CI329418
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAC                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGGTTGAGTTAT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGA-GTTGAGTTAT
EST: gi|86901294|gb|CI326137.1|CI326137
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATT-AA-                         -AGGTTGTTCTGTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88297641|gb|CI550704.1|CI550704
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|29633905|gb|CB638914.1|CB638914
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|145758136|gb|ES351653.1|ES351653
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAG                         CAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
EST: gi|88275241|gb|CI395845.1|CI395845
EST:     TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATT-AA-                         -AGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT
genomic: TTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 54 (downstream exon)
Score: 11

AGGTGCCATTGGCTAACAATGGTCAGTGATCCTCCAGCTTCAACAGTTGTTTTTACAGCCCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGgtagacctta ... ttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATTGATTACTTGCGGCAAGACAGCTGTTCTTCTCTGATGATGGGACCCAATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagagatttttccaaaatgactgatcttaggcttggttttgtgtttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATTGATTACTTGCGGCAAGACAGCTGTTCTTCTCTGATGATGGGACCCAATG
                   gactgat  putative branch site (score: 11)
                                     ttttgtgtttctcttc  putative PPT
      attttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattaacaaaagaactggaaacgtgtttttttttgttattttggtgcagagatttttccaaaatgactgatcttaggcttggttttgtgtttctcttcagCAGGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAGAGTTGAGTTATTGATTACTTGCGGCAAGACAGCTGTTCTTCTCTGATGATGGGACCCAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -taacaaa
- - - - - - - - - - - - - - - - - - - - -tggtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgactg