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gttataatccaccatccagagagtttttccattacttttggcctacttactcatacttcataaccatcaccttgcagATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGG
species | Oryza sativa |
transcript | LOC_Os06g45850.5 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGCTATGTACCTATGGAATATTAAAGTCTACTTGAAGAAAATGAAAAG ATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGEST: gi|14981799|gb|BI306477.1|BI306477
genomic: AAAGCTATGTACCTATGGAATA-TAAAGTCTACTTGAAGAAAATGAAAAGgttataatcc ... caccttgcagATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGG
EST: GAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAAGAAAATGAAAAG ATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGEST: gi|14980943|gb|BI305621.1|BI305621
genomic: GAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAAGAAAATGAAAAGgttataatcc ... caccttgcagATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGG
EST: GANAGCTATGTACCTATGGAATATAAAGTCTACTTGAAGAAAATGAAAAG ATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGEST: gi|58682991|gb|CK071678.1|CK071678
genomic: GAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAAGAAAATGAAAAGgttataatcc ... caccttgcagATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGG
EST: GAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAAGAAAATGAAAAG ATCTGGGGAATGGGGGGATCATCTGACTTTACAA
genomic: GAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAAGAAAATGAAAAGgttataatcc ... caccttgcagATCTGGGGAATGGGGGGATCATCTGACTTTACAA
gtttttccattacttttggcctacttactcatacttcataaccatcaccttgcagATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGG
tcacctt CT-rich tract
attactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttataatccaccatccagagagtttttccattacttttggcctacttactcatacttcataaccatcaccttgcagATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG