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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattttatggacaaccgtaccattgttacttctagtttttcttcacataactattttatttcacttgcaatgaacactggttgatctgacaaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT

Basic information

species Oryza sativa
transcript LOC_Os06g45840.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218486576|gb|FG956240.1|FG956240
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|218500576|gb|FG960552.1|FG960552
EST:     AGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGATATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: AGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|218481447|gb|FG951027.1|FG951027
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCCATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|38474825|gb|CF958958.1|CF958958
EST:     GCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|88688887|gb|CI732463.1|CI732463
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|27545921|gb|CA764047.2|CA764047
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|218489538|gb|FG952484.1|FG952484
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|29637643|gb|CB642652.1|CB642652
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|218494859|gb|FG953214.1|FG953214
EST:     TGGGCATTTGCAGACTTTAAATGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: TGGGCATTTGCAGACTTTAAA-GGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|88689244|gb|CI732820.1|CI732820
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|33678202|gb|CF306441.1|CF306441
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATG
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATG
EST: gi|55408531|gb|CV720907.1|CV720907
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|27577453|gb|CB000148.1|CB000148
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAAAG                         GTACTACTGCTGATGAGAAATCTGGCCATGAACTTAA
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAA
EST: gi|88689640|gb|CI733216.1|CI733216
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
EST: gi|88691348|gb|CI733931.1|CI733931
EST:     GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACG                         GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT
genomic: GTGGGCATTTGCAGACTTTAAAGGCGATGGATCCAATTGATGTTGAAACGgtatgtttct ... aaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataactattttatttcacttgcaatgaacactggttgatctgacaaattgacagGTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT
                                      atctgac  putative branch site (score: 3)
      tattttatttcactt  TA-rich tract