Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtactgtttttgaacagatttatcagcacaggtttttgtgtttgaagctaaatgtgttcttaatcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATCATTGGAGGTGGCGATTCTGTTGCTGCTGTCGAGAAGGCCGGGTTGGCGG

Basic information

species Oryza sativa
transcript LOC_Os06g45710.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g45710.1 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 5
----------------------gtgagtactgtttttgaacagatttatcagc-acaggtttttgtgtttgaagctaaatgtgttcttaatcaatt-cagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATCATTGGAGGTGGCGATTCTGTTGCTGCTGTCGAGAAGGCCGGGTTGGCGG
                      |  |  |   | ||| | |||     |||   ||     |||||   || |   |    | |||||   ||| | |||||||| |||||||| ||||| ||  | |  |  || || || ||||| || || |||||||| ||||||||||||||||| |||||||  ||| | || |
aatatttcaatgctacgatgctgctacaagcctatttcaccaggaagctcaattaccttgctttgtaagtgtattgaggattattcttctccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88836080|gb|CI371185.1|CI371185
EST:     AT-GCCCTATGGGAATGTTCGAGTTTGAGAAATTCGCTCCTGCCACTAAT                         CCAATTCCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86430449|gb|CI082872.1|CI082872
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89185866|gb|CI047735.1|CI047735
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88845049|gb|CI083974.1|CI083974
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATTACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|218487293|gb|FG966815.1|FG966815
EST:     ATGCGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88841948|gb|CI081204.1|CI081204
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86592320|gb|CI250974.1|CI250974
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88836384|gb|CI078281.1|CI078281
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|33658428|gb|CF281041.1|CF281041
EST:     GAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89192984|gb|CI050282.1|CI050282
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86536602|gb|CI176808.1|CI176808
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88964752|gb|CI084750.1|CI084750
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|87026812|gb|CI259465.1|CI259465
EST:     TGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAG                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: TGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86413984|gb|CI068191.1|CI068191
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88831423|gb|CI083817.1|CI083817
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88845062|gb|CI083987.1|CI083987
EST:     AAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: AAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89171165|gb|CI109689.1|CI109689
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|94362204|gb|CI052521.1|CI052521
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88831231|gb|CI082041.1|CI082041
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89183772|gb|CI046337.1|CI046337
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88841814|gb|CI081070.1|CI081070
EST:     TTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: TTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86431983|gb|CI085594.1|CI085594
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88841655|gb|CI080911.1|CI080911
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|25806842|gb|CA762803.1|CA762803
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTCCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|33691632|gb|CF319871.1|CF319871
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|33807811|gb|CF329797.1|CF329797
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86489956|gb|CI132589.1|CI132589
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|58694471|gb|CK083158.1|CK083158
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86431058|gb|CI083481.1|CI083481
EST:     GGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86255735|gb|CI066798.1|CI066798
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88996813|gb|CI389479.1|CI389479
EST:     TGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGNTGTTACAACGATC
genomic: TGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89181024|gb|CI045107.1|CI045107
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86490089|gb|CI132722.1|CI132722
EST:     CTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: CTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88841558|gb|CI080814.1|CI080814
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|87022135|gb|CI259207.1|CI259207
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86430190|gb|CI082613.1|CI082613
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|58664320|gb|CK053006.1|CK053006
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|218483033|gb|FG953130.1|FG953130
EST:     ATGGGCCTATGGGAGTG-TCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86430894|gb|CI083317.1|CI083317
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|87025654|gb|CI250148.1|CI250148
EST:     TATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: TATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86430259|gb|CI082682.1|CI082682
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86536506|gb|CI176712.1|CI176712
EST:     TGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: TGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|33803943|gb|CF327847.1|CF327847
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89168093|gb|CI109297.1|CI109297
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88840873|gb|CI080327.1|CI080327
EST:     GGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88837398|gb|CI078758.1|CI078758
EST:     GAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89184161|gb|CI046726.1|CI046726
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89186509|gb|CI048181.1|CI048181
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88837770|gb|CI079130.1|CI079130
EST:     GGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|33813052|gb|CF332416.1|CF332416
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88841727|gb|CI080983.1|CI080983
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88842184|gb|CI081440.1|CI081440
EST:     GGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89185592|gb|CI052118.1|CI052118
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89187167|gb|CI047234.1|CI047234
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88270103|gb|CI381401.1|CI381401
EST:     GAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86490724|gb|CI133357.1|CI133357
EST:     GGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86491522|gb|CI134155.1|CI134155
EST:     GTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|58588484|gb|CF986792.1|CF986792
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGGGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|218505511|gb|FG963986.1|FG963986
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86430261|gb|CI082684.1|CI082684
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88964591|gb|CI069939.1|CI069939
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88828529|gb|CI073399.1|CI073399
EST:     GGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86432463|gb|CI086074.1|CI086074
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|33689602|gb|CF317841.1|CF317841
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|14574745|gb|AU197260.1|AU197260
EST:     ATGGGCCTATGGGAGTGTNCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89192959|gb|CI050257.1|CI050257
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89195020|gb|CI051133.1|CI051133
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89186102|gb|CI047971.1|CI047971
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89173278|gb|CI041171.1|CI041171
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88850104|gb|CI091399.1|CI091399
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|87026890|gb|CI259543.1|CI259543
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86525429|gb|CI165635.1|CI165635
EST:     GCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: GCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89197988|gb|CI117466.1|CI117466
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86431549|gb|CI085160.1|CI085160
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86431553|gb|CI085164.1|CI085164
EST:     TGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: TGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|10794584|gb|AU108550.1|AU108550
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88964792|gb|CI084790.1|CI084790
EST:     TGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: TGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86431547|gb|CI085158.1|CI085158
EST:     CCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: CCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89178998|gb|CI043503.1|CI043503
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88907188|gb|CI089982.1|CI089982
EST:     TGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: TGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86413380|gb|CI067785.1|CI067785
EST:     TTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: TTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86430529|gb|CI082952.1|CI082952
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|87024345|gb|CI257086.1|CI257086
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|86430350|gb|CI082773.1|CI082773
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|33691161|gb|CF319400.1|CF319400
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88845237|gb|CI084162.1|CI084162
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88216472|gb|CI216321.1|CI216321
EST:     TTGAGAAATTCGCTGCTGGCACTGAT                         GC-ATGTGCCAAGAAATTGTCTGATATCACCGCGAAAGGCGTTACAACGAT
genomic: TTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAAT-TGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGAT
EST: gi|29675441|gb|CB671716.1|CB671716
EST:     ATGGGCCTATGGGAGTGTTTGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|218480492|gb|FG970510.1|FG970510
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCCAAAGGTGTTACAACGAT
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCC-AAAGGTGTTACAACGAT
EST: gi|89184917|gb|CI048473.1|CI048473
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88837347|gb|CI078707.1|CI078707
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|88837082|gb|CI078442.1|CI078442
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATTACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
EST: gi|89188244|gb|CI115493.1|CI115493
EST:     ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGAT                         GCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC
genomic: ATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 72 (downstream exon)
Score: 117

CATCAAGACTTTCAGTGAAACTTTGGATACTACCAAGACTGTCATCTGGAATGGGCCTATGGGAGTGTTCGAGTTTGAGAAATTCGCTGCTGGCACTGATgtgagtactg ... atcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATCATTGGAGGTGGCGATTCTGTTGCTGCTGTCGAGAAGGCCGGGTTGGCGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatcagcacaggtttttgtgtttgaagctaaatgtgttcttaatcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATCATTGGAGGTGGCGATTCTGTTGCTGCTGTCGAGAAGGCCGGGTTGGCGG
                                        tcttaat  putative branch site (score: 117)
                                          ttaatcaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtactgtttttgaacagatttatcagcacaggtttttgtgtttgaagctaaatgtgttcttaatcaattcagGCAATTGCCAAGAAATTGGCTGATATCACCGCCAAAGGTGTTACAACGATCATTGGAGGTGGCGATTCTGTTGCTGCTGTCGAGAAGGCCGGGTTGGCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT