1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagcatcttttcataatggtaagattctgcatattttgtagtgcgctcgttcaattattaatctcatttttttcttttaatacatcccagGAACAATTACTAGTGCAGCTGCTTTGTTAAAACAGGAGGGAGCAGAGGCTGTCTATGCTTGTAGCACACATGCTGTCTTCAGGTTTGGCAGTTGGTTTAT
species | Oryza sativa |
transcript | LOC_Os06g41360.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGAAGGGTAAGGTCGCCATCATGGTTGATGTTTTTATAGACACAGCAG GAACAATTACTAGTGCAGCTGCTTTGTTAAAACAGGAGGGAGCAGAGGCTGEST: gi|5005492|gb|AU070257.1|AU070257
genomic: TGTGAAGGGTAAGGTCGCCATCATGGTTGATGATATGATAGACACAGCAGgttagcatct ... tacatcccagGAACAATTACTAGTGCAGCTGCTTTGTTAAAACAGGAGGGAGCAGAGGCTG
EST: TGTGAAGGGTAAGGTCGCCATCATGGTTGATGATATGATAGACACAGCAG GAACAATTACTAGTGCAGCTGCTTTGTTAAAACAGGAGGGAGCAGAGGCTG
genomic: TGTGAAGGGTAAGGTCGCCATCATGGTTGATGATATGATAGACACAGCAGgttagcatct ... tacatcccagGAACAATTACTAGTGCAGCTGCTTTGTTAAAACAGGAGGGAGCAGAGGCTG
ttgtagtgcgctcgttcaattattaatctcatttttttcttttaatacatcccagGAACAATTACTAGTGCAGCTGCTTTGTTAAAACAGGAGGGAGCAGAGGCTGTCTATGCTTGTAGCACACATGCTGTCTTCAGGTTTGGCAGTTGGTTTAT
tttttttcttttaat CT-rich tract
ttcaattattaatctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcatcttttcataatggtaagattctgcatattttgtagtgcgctcgttcaattattaatctcatttttttcttttaatacatcccagGAACAATTACTAGTGCAGCTGCTTTGTTAAAACAGGAGGGAGCAGAGGCTGTCTATGCTTGTAGCACACATGCTGTCTTCAGGTTTGGCAGTTGGTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG