1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacctacaaataagcaacgttgtaaaactgatttttttattacacaactagcaagcaggctcctaatttggattaattttgttccattttttcctgacagAATAATCATGGCAATTTGGAAAATGCGATCACTGAGTCCAGAACAGCAGGGGGATATGATCGAAAAAGAGTCCGATACCAAAGAACTCCAGCTCGAAGAA
species | Oryza sativa |
transcript | LOC_Os06g40570.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
aactagcaagcaggctcctaatttggattaattttgttccattttttcctgacagAATAATCATGGCAATTTGGAAAATGCGATCACTGAGTCCAGAACAGCAGGGGGATATGATCGAAAAAGAGTCCGATACCAAAGAACTCCAGCTCGAAGAA
ttttgttccatttttt CT-rich tract
attaattttgttccat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacctacaaataagcaacgttgtaaaactgatttttttattacacaactagcaagcaggctcctaatttggattaattttgttccattttttcctgacagAATAATCATGGCAATTTGGAAAATGCGATCACTGAGTCCAGAACAGCAGGGGGATATGATCGAAAAAGAGTCCGATACCAAAGAACTCCAGCTCGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- -ctacaaa
- - - - - -aagcaac
- - - - - - - - - - - - - - - - - - - - -acacaac
- - - - - - - - - - - - - - - - - - - - - - - - - gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctcct