1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatttttcattaatagaataatagtgacacattcaaaactcggttataattctgtttgatagtgtcttgacatctgatatcgtgttttttatttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAACGAGCCAGAGTCAGGGCCCCAGCTAGATAAGTTTTTACCATATATCATT
species | Oryza sativa |
transcript | LOC_Os06g39344.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTT CACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAAEST: gi|24468726|gb|CA305675.1|CA305675
genomic: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTTgtatgttccg ... atttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAA
EST: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTT CACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAAEST: gi|29658500|gb|CB654775.1|CB654775
genomic: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTTgtatgttccg ... atttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAA
EST: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTT CACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAAEST: gi|29614417|gb|CB619430.1|CB619430
genomic: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTTgtatgttccg ... atttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAA
EST: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTT CACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAAEST: gi|58695138|gb|CK083825.1|CK083825
genomic: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTTgtatgttccg ... atttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAA
EST: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTT CACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAAEST: gi|38475804|gb|CF959937.1|CF959937
genomic: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTTgtatgttccg ... atttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAA
EST: CTCAGGGAATCCCTCTTGAGTGCTAACTT CACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAAEST: gi|702653|gb|D48944.1|D48944
genomic: CTCAGGGAATCCCTCTTGAGTGCTAACTTgtatgttccg ... atttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAA
EST: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTT CACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAA
genomic: CCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAACTTgtatgttccg ... atttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAA
ataattctgtttgatagtgtcttgacatctgatatcgtgttttttatttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAACGAGCCAGAGTCAGGGCCCCAGCTAGATAAGTTTTTACCATATATCATT
tgttttttattttt CT-rich tract
tgttttttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttttcattaatagaataatagtgacacattcaaaactcggttataattctgtttgatagtgtcttgacatctgatatcgtgttttttatttttgcagCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAAGAACGAGCCAGAGTCAGGGCCCCAGCTAGATAAGTTTTTACCATATATCATT
- - tttcatt
- - - - - - - - - - - - - - -cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctga