1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acaatcctcttgatagaaaatggttctatacagcctatccataggttctttcttgtccagttctactttttaatactgtatttaaatgccaaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCTCCTGAGCTCATATTTGGTGCAACTGAGTACACAACATCAATTGATATAT
species | Oryza sativa |
transcript | LOC_Os06g35530.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG ATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCTEST: gi|15008260|gb|AU222648.1|AU222648
genomic: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTGgtatgtaaag ... aaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCT
EST: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG ATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCTEST: gi|29672896|gb|CB669171.1|CB669171
genomic: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTGgtatgtaaag ... aaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCT
EST: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG ATTAAAGGTGAAAGCAA-TATATCTTACATATGCTEST: gi|58680026|gb|CK068713.1|CK068713
genomic: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTGgtatgtaaag ... aaactgccagATTAAAGGTGAA-GCAAATATATCTTACATATGCT
EST: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG ATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCTEST: gi|58605154|gb|CK033187.1|CK033187
genomic: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTGgtatgtaaag ... aaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCT
EST: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG ATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTAEST: gi|88725747|gb|CI749006.1|CI749006
genomic: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTGgtatgtaaag ... aaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTA
EST: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG ATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGEST: gi|29689142|gb|CB685417.1|CB685417
genomic: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTGgtatgtaaag ... aaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTG
EST: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG ATTAAAGGTGAAGCAAATATATCTEST: gi|29660849|gb|CB657124.1|CB657124
genomic: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTGgtatgtaaag ... aaactgccagATTAAAGGTGAAGCAAATATATCT
EST: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG ATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCT
genomic: CTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTGgtatgtaaag ... aaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCT
ttctttcttgtccagttctactttttaatactgtatttaaatgccaaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCTCCTGAGCTCATATTTGGTGCAACTGAGTACACAACATCAATTGATATAT
ttttaat putative branch site (score: 43)
ttctactttttaatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatcctcttgatagaaaatggttctatacagcctatccataggttctttcttgtccagttctactttttaatactgtatttaaatgccaaactgccagATTAAAGGTGAAGCAAATATATCTTACATATGCTCACGTTACTATCGTGCTCCTGAGCTCATATTTGGTGCAACTGAGTACACAACATCAATTGATATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - atagaaaa
- - - - - - - - - - tggttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgcc