1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatccctgacattgaatgaaattaggtgtttttgctgcgtaatgataaatgcgtaatttgggtagctaactcatccttccattttttgtgacttctacagACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGCCGTGATACAGATCAATGGATGTCATATCGACTGCTTCCTGAGAATCTCA
species | Oryza sativa |
transcript | LOC_Os06g33570.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATTGGTAATGTGCAG ACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGCEST: gi|58601774|gb|CK012302.1|CK012302
genomic: TCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATTGGTAATGTGCAGgtacgcatat ... acttctacagACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGC
EST: TCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATTGGTAATGTGCAG ACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGCEST: gi|29666671|gb|CB662946.1|CB662946
genomic: TCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATTGGTAATGTGCAGgtacgcatat ... acttctacagACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGC
EST: TCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATTGGTAATGTGCAG ACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGC
genomic: TCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATTGGTAATGTGCAGgtacgcatat ... acttctacagACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGC
taaatgcgtaatttgggtagctaactcatccttccattttttgtgacttctacagACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGCCGTGATACAGATCAATGGATGTCATATCGACTGCTTCCTGAGAATCTCA
agctaac putative branch site (score: 19)
cttctac putative PPT
attttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatccctgacattgaatgaaattaggtgtttttgctgcgtaatgataaatgcgtaatttgggtagctaactcatccttccattttttgtgacttctacagACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGCCGTGATACAGATCAATGGATGTCATATCGACTGCTTCCTGAGAATCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - cctgaca
- - - - - -ttgaatg
- - - - - - - - - - - - - - - - tgctgcg