1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttcctaagactaatggtacccgtaccccgtttgttgtttatgcaaaaataatctgtgcgtaccctttaaatttctgagtgactatttgtcaatgttacagGTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGGACAGCCCATTGCTGTCACG
species | Oryza sativa |
transcript | LOC_Os06g30460.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGATAGAAACTGACAAAGCTACGCTTGAGTTTGAGAGCCTTGAAGAGGG GTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGGEST: gi|701312|gb|D47603.1|D47603
genomic: GAGATAGAAACTGACAAAGCTACGCTTGAGTTTGAGAGCCTTGAAGAGGGgtaatgtcct ... aatgttacagGTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGG
EST: GAGATAGAAACTGACAAAGCTACGCTTGAGTTTGAGAGCCTTGAAGAGGG GTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGGEST: gi|58690605|gb|CK079292.1|CK079292
genomic: GAGATAGAAACTGACAAAGCTACGCTTGAGTTTGAGAGCCTTGAAGAGGGgtaatgtcct ... aatgttacagGTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGG
EST: GAGATAGAAACTGACAAAGCTACGCTTGAGTTTGAGAGCCTTGAAGAGGG GTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGGEST: gi|701522|gb|D47813.1|D47813
genomic: GAGATAGAAACTGACAAAGCTACGCTTGAGTTTGAGAGCCTTGAAGAGGGgtaatgtcct ... aatgttacagGTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGG
EST: GAGATAGAAACTGACAAAGCTACGCTTGAGTTTGAGAGCCTTGAAGAGGG GTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGG
genomic: GAGATAGAAACTGACAAAGCTACGCTTGAGTTTGAGAGCCTTGAAGAGGGgtaatgtcct ... aatgttacagGTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGG
aaataatctgtgcgtaccctttaaatttctgagtgactatttgtcaatgttacagGTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGGACAGCCCATTGCTGTCACG
tttaaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctaagactaatggtacccgtaccccgtttgttgtttatgcaaaaataatctgtgcgtaccctttaaatttctgagtgactatttgtcaatgttacagGTATCTGGCCAAGATCTTAGCACCTGAAGGTTCAAAAGATGTTCAGGTTGGACAGCCCATTGCTGTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - ttgttgt
- - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgtgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgagtg