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...caaattttatagtagaaaatgtggtactcccggtacctcctcaaggaccttaaaacttctaaaataaataagcttgtgtgctctttctctgtgcttacagGTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCAGTTACACCGGATGGTCCTGAAATGCTGTTACTTGATTATCCCAGTCACC
species | Oryza sativa |
transcript | LOC_Os06g24704.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTACACTTGGTCGAGTTAATATTGCAGTTAATGCGGTTTATATTTCAAAG GTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCAEST: gi|29670228|gb|CB666503.1|CB666503
genomic: TTACACTTGGTCGAGTTAATATTGCAGTTAATGCGGTTTATATTTCAAAGgtatgtcatg ... gtgcttacagGTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCA
EST: TTACACTTGGTCGAGTTAATATTGCAGTTAATGCGGTTTATATTTCAAAG GTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCAEST: gi|29665965|gb|CB662240.1|CB662240
genomic: TTACACTTGGTCGAGTTAATATTGCAGTTAATGCGGTTTATATTTCAAAGgtatgtcatg ... gtgcttacagGTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCA
EST: TTACACTTGGTCGAGTTAATATTGCAGTTAATGCGGATTATATTTCAAAG GTTGGCGTTGCAATTGCTGAGAGATATGCTTTGTCAAGGAGAGCCTTTTCA
genomic: TTACACTTGGTCGAGTTAATATTGCAGTTAATGCGGTTTATATTTCAAAGgtatgtcatg ... gtgcttacagGTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCA
gaccttaaaacttctaaaataaataagcttgtgtgctctttctctgtgcttacagGTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCAGTTACACCGGATGGTCCTGAAATGCTGTTACTTGATTATCCCAGTCACC
ttctaaa putative branch site (score: 16)
ctctttctctgtgctt putative PPT
taaaacttctaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattttatagtagaaaatgtggtactcccggtacctcctcaaggaccttaaaacttctaaaataaataagcttgtgtgctctttctctgtgcttacagGTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCAGTTACACCGGATGGTCCTGAAATGCTGTTACTTGATTATCCCAGTCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - -gtagaaaa
- - - - - - - - - - -tggtact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa