1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccaattttcttacattgtttgtaaccaaattataatccaatgttaattttactgtgcataaaattcaactattgatgttgtactctggttcatctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTGCTGTTCAACAGGGAAATCCACAGGTTCCATCTCAGGCTCAGGCTGCAC
species | Oryza sativa |
transcript | LOC_Os06g15360.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|58682592|gb|CK071279.1|CK071279
genomic: -GCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|117226238|gb|CT846174.1|CT846174
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|58670606|gb|CK059292.1|CK059292
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29660320|gb|CB656595.1|CB656595
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|58596519|gb|CK007047.1|CK007047
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29643186|gb|CB648193.1|CB648193
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGACAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29643232|gb|CB648239.1|CB648239
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29657664|gb|CB653939.1|CB653939
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29630613|gb|CB635622.1|CB635622
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29668712|gb|CB664987.1|CB664987
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29673854|gb|CB670129.1|CB670129
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29655833|gb|CB652108.1|CB652108
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29670071|gb|CB666346.1|CB666346
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|58670896|gb|CK059582.1|CK059582
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCTCCACAACCTGTGGCTCGAGCACCTGCTEST: gi|29629490|gb|CB634499.1|CB634499
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
EST: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCT GGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
genomic: TGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTATCTGTATTCTgtaagttcca ... catctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
attttactgtgcataaaattcaactattgatgttgtactctggttcatctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTGCTGTTCAACAGGGAAATCCACAGGTTCCATCTCAGGCTCAGGCTGCAC
tattgat putative branch site (score: 90)
ttcatct putative PPT
ataaaattcaactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaattttcttacattgtttgtaaccaaattataatccaatgttaattttactgtgcataaaattcaactattgatgttgtactctggttcatctgttagGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCTGCTGTTCAACAGGGAAATCCACAGGTTCCATCTCAGGCTCAGGCTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - cttacat
- - - - - - - -tgtttgt
- - - - - - - - - - - -accaaat
- - - - - - - - - - - - - - - - -aatccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttgt