1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtctgaattgcagttatatatgtcctcaaaaatgtttcgttcattcgaactacttgtgcttatgaatcatggcacgttcaatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG
species | Oryza sativa |
transcript | LOC_Os06g13720.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAG GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATEST: gi|88322936|gb|CI548030.1|CI548030
genomic: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
EST: CATCGCGAAAGCAAAG GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATEST: gi|88974166|gb|CI002785.1|CI002785
genomic: CATCGCGAAAGCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
EST: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAG GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATEST: gi|218486487|gb|FG956233.1|FG956233
genomic: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
EST: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAG GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATEST: gi|218483530|gb|FG955438.1|FG955438
genomic: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
EST: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAG GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATEST: gi|218494530|gb|FG953442.1|FG953442
genomic: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
EST: GGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAAGCAA-G GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAEST: gi|218478459|gb|FG951913.1|FG951913
genomic: GGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAA-GCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAA
EST: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAG GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATEST: gi|86424694|gb|CI063455.1|CI063455
genomic: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
EST: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAG GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATEST: gi|88199598|gb|CI199448.1|CI199448
genomic: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
EST: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAG GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
genomic: TGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAGgtctgaattg ... aatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAAT
tttcgttcattcgaactacttgtgcttatgaatcatggcacgttcaatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG
ttatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgaattgcagttatatatgtcctcaaaaatgtttcgttcattcgaactacttgtgcttatgaatcatggcacgttcaatactgcagGAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG