1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actgatttgttagtaattgggcacattcaacaggcttagcgataaatcctttaccatttttattttgcgatgaaataactctactactctacttatatagGAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATTGTATCACAAGACATAGCAAAAGAAGTTTACAGGAAACACAAGAGAGGAG
species | Oryza sativa |
transcript | LOC_Os06g12390.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCAGCCTCATCGAGACCCATATAGCAAGTGGTACATAACCCCAGAG GAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATTEST: gi|163929014|gb|EG709792.1|EG709792
genomic: ATTCTCAGCCTCATCGAGACCCATATAGCAAGTGGTACATAACCCCAGAGgtagttgatt ... acttatatagGAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATT
EST: ATTCTCAGCCTCATCGAGACCCATATAGCAAGTGGTACATAACCCCAGAG GAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATTEST: gi|58682889|gb|CK071576.1|CK071576
genomic: ATTCTCAGCCTCATCGAGACCCATATAGCAAGTGGTACATAACCCCAGAGgtagttgatt ... acttatatagGAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATT
EST: ATTCTCAGCCTCATCGAGACCCATATAGCAAGTGGTACATAACCCCAGAG GAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATTEST: gi|218485432|gb|FG946449.1|FG946449
genomic: ATTCTCAGCCTCATCGAGACCCATATAGCAAGTGGTACATAACCCCAGAGgtagttgatt ... acttatatagGAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATT
EST: ATTCTCAGCCTCATCGAGACCCATATAGCAAGTGGTACATAACCCCAGAG GAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATT
genomic: ATTCTCAGCCTCATCGAGACCCATATAGCAAGTGGTACATAACCCCAGAGgtagttgatt ... acttatatagGAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATT
atcctttaccatttttattttgcgatgaaataactctactactctacttatatagGAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATTGTATCACAAGACATAGCAAAAGAAGTTTACAGGAAACACAAGAGAGGAG
aaataac putative branch site (score: 2)
ctctactt putative PPT
ttaccatttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgatttgttagtaattgggcacattcaacaggcttagcgataaatcctttaccatttttattttgcgatgaaataactctactactctacttatatagGAATGGCCTGAGGAGAGTTATCCTCCATGGGCACATGGTCCGGGATACATTGTATCACAAGACATAGCAAAAGAAGTTTACAGGAAACACAAGAGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG