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gtatctcttatttttcatattcactggcaacacttctgtaatgttgcaaccgcgtatttaataatcttttataatccttagGAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAG
species | Oryza sativa |
transcript | LOC_Os06g11320.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCGGCAGTGGAGAGCTTCAAGCATGCATTGGAGTTGGAGCCAAGTGATG GAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAGEST: gi|86496111|gb|CI138744.1|CI138744
genomic: TGCGGCAGTGGAGAGCTTCAAGCATGCATTGGAGTTGGAGCCAAGTGATGgtatctctta ... taatccttagGAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAG
EST: TGCGGCAGTGGAGAGCTTCAAGCATGCATTGGAGTTGGAGCCAAGTGATG GAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAGEST: gi|13164996|gb|AU173793.1|AU173793
genomic: TGCGGCAGTGGAGAGCTTCAAGCATGCATTGGAGTTGGAGCCAAGTGATGgtatctctta ... taatccttagGAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAG
EST: GAGTTGGAGCCAAGTGATG GAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAG
genomic: GAGTTGGAGCCAAGTGATGgtatctctta ... taatccttagGAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAG
gcaacacttctgtaatgttgcaaccgcgtatttaataatcttttataatccttagGAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAG
atttaat putative branch site (score: 4)
tcttttat putative PPT
tatttaataatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctcttatttttcatattcactggcaacacttctgtaatgttgcaaccgcgtatttaataatcttttataatccttagGAGGAATTAAACGAGAGCTAGCTGCTGCAAAGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG