Skip to another splice site:
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttctgttccatgtcatttatctttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA

Basic information

species Oryza sativa
transcript LOC_Os06g09290.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g09290.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G110185_T01 (Zea mays), 3'ss of exon 8
gtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttctgttccatgtcatttatctttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA
                       |   |  | ||   ||||  | ||||||| |  || ||  | |      |        |    ||||||| || | ||     || ||||||   |||| || || ||| |||| || ||||| || || || ||||||||||| ||||| |||||||| ||||||||||| ||||||||  | || || || || ||
-----------------------gtgtggtttca---tctgagtggtttctgctttat-tcgatgacagacga--------tcaggttctcacatt-gcct-----tgcttgttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGCCCGCAGGAAAACGGTGACAGAAAAGGATTTTCTCGATGCTGTCAACAA

upper sequence: LOC_Os06g09290.1 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 9
gtaagtgccgggaattcttgcatgacaga-atccagtctctggctagtttctgttccatgtcatttatctttaacctcctttttt---ttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA
            ||| |||   |||  |  |    |||| ||  || | ||  ||  |||   ||     |||   |   || ||   ||||||||  ||      ||| |     ||    |||| ||||||||| | ||||||||||| || ||||| ||||| || || || || || |||||||| ||||| |||||||| ||| | ||  | ||||| ||
--------gtaaaatacttatctgaagggcacgttgtctttgtatactctccattg-atggttttggctgttattttgggttcttggtttttctcatattc-----tttttccacatt----cagGAGCCGACATAAGAAGTGTGTGCACTGAAGCTGGAATGTATGCTATTCGAGCACGAAGGAAGACAGTGACCGAGAAGGACTTCCTTGATTCAGTGAACAA

upper sequence: LOC_Os06g09290.1 (Oryza sativa), 3'ss of exon 6
lower sequence: EDP03835 (Chlamydomonas reinhardtii), 3'ss of exon 11
---------------------------------------------gtaagtgccgggaattcttg----catgacagaatccagtctctg----gctagtttc-tgtt-ccatgtcatttatc-tttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA-------------
                                              |   |    |||||   ||    |  |  || | |  |   |||    ||  || || ||   ||||  ||  |  |  | ||     ||| | | |  | |    |    |   || || | ||      |  |   |  | |  | || ||||||||||| || |||||||| |||||||||||| |||| || ||||| |||||||| |||||||| || || || ||             
gtgcggcgaccgcgtgcggccgcaccccgccccaccgcatccctcatcccttgttggaatctgtggtgacgcgctaggaccttgctcctgccccgccggtatcatgccaccatcacagatgccactcaaaactgtttgtatgtcattaaacattatgaacggtatt-gctgttgtgcgaccactcgcagGTCG-GTTTGCACGGAGGCGGGAATGTACGCTATCCGCGCTCGCCGGAAAACTGTGACGGAGAAGGACTTCTTGGAGGCTGTTAACAAGGTCATCAAGGGC

upper sequence: LOC_Os06g09290.1 (Oryza sativa), 3'ss of exon 6
lower sequence: PP1S152_13V6.1 (Physcomitrella patens), 3'ss of exon 9
gtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttctgttccatgtcatttatctttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA
   | ||  |        || |  |     || | ||    | |  |             || |  | |  || |||      | |  || |      || |   ||| ||| |    |||| || || || ||||||||||| || ||||| || ||||| ||||| || || ||||||||||| |||||||||||||| || ||||| || || || ||
--gaatgatgcaggcgactgtagaatgttgtcgaatcgtgagttgatc----------agcactagtgtgaaatctcaaaccatgtcactga-----agcaa---gtgcttgatctg-cagGAGCAGATATCCGGAGTGTGTGTACAGAGGCAGGTATGTATGCCATTCGTGCACGCAGGAAGACTGTGACAGAGAAGGACTTTTTGGAAGCTGTCAACAA

upper sequence: LOC_Os06g09290.1 (Oryza sativa), 3'ss of exon 6
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 3'ss of exon 9
gtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttctgttccatgtcatttatctttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA
         || |  |  || |      |  | ||| |     || |||  | |       |  | | |  ||| |     |  |   |         ||| ||  ||||        |||| || || || ||||||||||| |||||||| || ||||| ||||| || || ||||||||||| ||||||||||| || |||||||| || || |||||
--------tggaacattctgta-----aagccgagtgttgtagtattttgagcttatgaatacctgtataaaactttaaaatcatgcgcctgaaccaagctgttcctgtt--------cagGTGCGGATATTCGGAGTGTGTGTACGGAGGCAGGTATGTATGCCATTCGTGCACGCAGGAAGACTGTGACAGAGAAAGACTTCTTGGAAGCTGTCAATAA

upper sequence: LOC_Os06g09290.1 (Oryza sativa), 3'ss of exon 6
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 3'ss of exon 9
gtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttctgttccatgtcatttatctttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA------
     ||| ||  | | | | |||      || | ||    | |  |             || |  | |  || |||      | |  || |      || |   ||| ||| |    |||| || || || ||||||||||| || ||||| || ||||| ||||| || || ||||||||||| |||||||||||||| || ||||| || || || ||      
-----tgcaggcgactgtagaatgttg---tcgaatcgtgagttgatc----------agcactagtgtgaaatctcaaaccatgtcactga-----agcaa---gtgcttgatctg-caggagcagATATCCGGAGTGTGTGTACAGAGGCAGGTATGTATGCCATTCGTGCACGCAGGAAGACTGTGACAGAGAAGGACTTTTTGGAAGCTGTCAACAAGGTCAT

upper sequence: LOC_Os06g09290.1 (Oryza sativa), 3'ss of exon 6
lower sequence: EFJ29161 (Selaginella moellendorffii), 3'ss of exon 9
gtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttctgttcc-atgtcatttatc-tttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA
                                         |  ||||   || |  ||    |  ||  |||   ||||| | |   |   |||| || | | |   ||  | ||     ||| || || ||  |||| || ||||| || || ||||||||||| ||||| ||||||||||| || ||||| ||||| |||||| | || || ||||| ||
-----------------------------------------gtaagttctcgtgcttatacggtagatggttttctctcctctctcggtaaccacgctttggtttgcttgaatctt----tagGCGCTGATATCAGGAGCGTTTGCACTGAAGCCGGCATGTACGCGATCCGAGCTCGCAGGAAAACAGTGACGGAGAAAGATTTCCTCGAGGCCGTGAACAA

upper sequence: LOC_Os06g09290.1 (Oryza sativa), 3'ss of exon 6
lower sequence: EFJ13722 (Selaginella moellendorffii), 3'ss of exon 9
gtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttctgttcc-atgtcatttatc-tttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA
                                         |  ||||   || |  ||    |  ||  |||   ||||| | |   |   || | || | | |   ||  | ||     ||| || || ||  |||| || ||||| || || ||||||||||| ||||| ||||||||||| || ||||| ||||| |||||| | || || ||||| ||
-----------------------------------------gtaagttctcgtgcttatacggtagatggttttctctcctctctcggtaaccaagctttggtttgcttgaatctt----tagGCGCTGATATCAGGAGCGTTTGCACTGAAGCCGGCATGTACGCGATCCGAGCTCGCAGGAAAACAGTGACGGAGAAAGATTTCCTCGAGGCCGTGAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88830126|gb|CI074798.1|CI074798
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86431013|gb|CI083436.1|CI083436
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86535450|gb|CI175656.1|CI175656
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88510577|gb|CI438083.1|CI438083
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88476451|gb|CI413722.1|CI413722
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88264764|gb|CI368538.1|CI368538
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86545388|gb|CI185594.1|CI185594
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86414435|gb|CI068838.1|CI068838
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88319462|gb|CI518306.1|CI518306
EST:     GCGGAACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATNTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88200394|gb|CI200244.1|CI200244
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88199676|gb|CI199526.1|CI199526
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88837952|gb|CI371530.1|CI371530
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GG-CCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACCCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88270642|gb|CI385900.1|CI385900
EST:     GC-GGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88429584|gb|CI551649.1|CI551649
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88448181|gb|CI541767.1|CI541767
EST:     ACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: ACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88243651|gb|CI244048.1|CI244048
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86852767|gb|CI323076.1|CI323076
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|66929574|gb|CX116422.1|CX116422
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86593839|gb|CI260068.1|CI260068
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89196514|gb|CI399100.1|CI399100
EST:     TCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTTTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: TCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|218494177|gb|FG955168.1|FG955168
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88841960|gb|CI081216.1|CI081216
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88520017|gb|CI447671.1|CI447671
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88845085|gb|CI084010.1|CI084010
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|33795295|gb|CF323519.1|CF323519
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|94362521|gb|CI052387.1|CI052387
EST:     GCGGGACATCCGGTGTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88409154|gb|CI556862.1|CI556862
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88323685|gb|CI558706.1|CI558706
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86491229|gb|CI133862.1|CI133862
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88840491|gb|CI079945.1|CI079945
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86874510|gb|CI316876.1|CI316876
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACCCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86429797|gb|CI082220.1|CI082220
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88245550|gb|CI245399.1|CI245399
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88466583|gb|CI532390.1|CI532390
EST:     TGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: TGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86534876|gb|CI175082.1|CI175082
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89175028|gb|CI041106.1|CI041106
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88238294|gb|CI238143.1|CI238143
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88248462|gb|CI248311.1|CI248311
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86878831|gb|CI314330.1|CI314330
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|218498848|gb|FG967665.1|FG967665
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGG
EST: gi|86260871|gb|CI066546.1|CI066546
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89174233|gb|CI042126.1|CI042126
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|218485830|gb|FG961562.1|FG961562
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88836350|gb|CI078247.1|CI078247
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|33658399|gb|CF281012.1|CF281012
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89189866|gb|CI049405.1|CI049405
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86425210|gb|CI070307.1|CI070307
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86867457|gb|CI337880.1|CI337880
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89172828|gb|CI022707.1|CI022707
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88439745|gb|CI541302.1|CI541302
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89188907|gb|CI048643.1|CI048643
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86889209|gb|CI315820.1|CI315820
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89187220|gb|CI047287.1|CI047287
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86544859|gb|CI185065.1|CI185065
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88907113|gb|CI089907.1|CI089907
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCTATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|3762395|gb|C99643.1|C99643
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88502029|gb|CI429535.1|CI429535
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86415446|gb|CI069849.1|CI069849
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|86250823|gb|CI007686.1|CI007686
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88383593|gb|CI543366.1|CI543366
EST:     GACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88295643|gb|CI530206.1|CI530206
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89175431|gb|CI042452.1|CI042452
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88374962|gb|CI521028.1|CI521028
EST:     CCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: CCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88969982|gb|CI383484.1|CI383484
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|89192450|gb|CI016459.1|CI016459
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|29646391|gb|CB651398.1|CB651398
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88282909|gb|CI402109.1|CI402109
EST:     TGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTNGCATGTACGCCATCCGCG
genomic: TGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88279031|gb|CI400031.1|CI400031
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
EST: gi|88844652|gb|CI021227.1|CI021227
EST:     GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTG                         GGGCCGACGTACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG
genomic: GCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 54 (upstream exon), 68 (downstream exon)
Score: 14

GAGGGCCGGACCCAGATCTTCAAGATCCACACTCGCACCATGAACTGCGAGCGGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGgtaagtgccg ... gttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA
                    ttctcac  putative branch site (score: 14)
            ttttttttttctca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgccgggaattcttgcatgacagaatccagtctctggctagtttctgttccatgtcatttatctttaacctccttttttttttctcacgtttggctatttgtgtttgttggaacagGGGCCGACATACGGAGTGTGTGCACGGAGGCTGGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA