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...gatcaaaaccatttttgtgacattgtcaaatcttgaacaaactgcttgcactttatggagaacagaatgtgacataaatagtcaataaattgtcacacagGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCG
species | Oryza sativa |
transcript | LOC_Os06g08005.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT GAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCEST: gi|29687001|gb|CB683276.1|CB683276
genomic: ACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaaggatct ... tgtcacacagGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTC
EST: ACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT GAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCEST: gi|300215905|gb|HO088531.1|HO088531
genomic: ACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaaggatct ... tgtcacacagGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTC
EST: ACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT GAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCEST: gi|218501509|gb|FG952275.1|FG952275
genomic: ACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaaggatct ... tgtcacacagGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTC
EST: ACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT GAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTC
genomic: ACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaaggatct ... tgtcacacagGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTC
ttgcactttatggagaacagaatgtgacataaatagtcaataaattgtcacacagGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCG
ataaatagtcaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcaaaaccatttttgtgacattgtcaaatcttgaacaaactgcttgcactttatggagaacagaatgtgacataaatagtcaataaattgtcacacagGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
gatcaaa
- - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataaa