1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacctttggagcctcatatgttagactggtagcatgagaacatcatattgtttagaacaattgttcaagtcttctcttattgatggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTTTGTTTGATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTA
species | Oryza sativa |
transcript | LOC_Os06g06820.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAG GGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTEST: gi|87018040|gb|CI275854.1|CI275854
genomic: TTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAGgtacctttgg ... atggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
EST: CTCTCTTGCATGAGTCTATCTATTGTCAG GGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTEST: gi|86858904|gb|CI275118.1|CI275118
genomic: CTCTCTTGCATGAGTCTATCTATTGTCAGgtacctttgg ... atggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
EST: TTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAG GGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTEST: gi|87029615|gb|CI257410.1|CI257410
genomic: TTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAGgtacctttgg ... atggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
EST: TTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAG GGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTEST: gi|112786319|gb|EE590521.1|EE590521
genomic: TTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAGgtacctttgg ... atggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
EST: TTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAG GGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTEST: gi|88344031|gb|CI638766.1|CI638766
genomic: TTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAGgtacctttgg ... atggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
EST: ATGAGTCTATCTATTGTCAG GGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTEST: gi|88569436|gb|CI660611.1|CI660611
genomic: ATGAGTCTATCTATTGTCAGgtacctttgg ... atggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
EST: ATGAGTCTATCTATTGTCAG GGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTEST: gi|88573704|gb|CI665473.1|CI665473
genomic: ATGAGTCTATCTATTGTCAGgtacctttgg ... atggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
EST: ATGAGTCTATCTATTGTCAG GGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
genomic: ATGAGTCTATCTATTGTCAGgtacctttgg ... atggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGT
gaacatcatattgtttagaacaattgttcaagtcttctcttattgatggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTTTGTTTGATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTA
tattgat putative branch site (score: 12)
atattgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctttggagcctcatatgttagactggtagcatgagaacatcatattgtttagaacaattgttcaagtcttctcttattgatggatgcagGGTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTTTGTTTGATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG