1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtctgttaaacaactgcatcggtatataactttgttcttctgaaacttcagaacctatgctaaaacatcaagaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTTTCAATGTGATCAATGGAGGATCCCATGCTGGAAACAAACTTGCCATGC
species | Oryza sativa |
transcript | LOC_Os06g04510.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAG CACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTEST: gi|58695165|gb|CK083852.1|CK083852
genomic: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAGgtctgttaaa ... gaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
EST: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAG CACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCTGCTEST: gi|29669039|gb|CB665314.1|CB665314
genomic: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAGgtctgttaaa ... gaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
EST: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAG CACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTEST: gi|29638404|gb|CB643413.1|CB643413
genomic: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAGgtctgttaaa ... gaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
EST: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAG CACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTEST: gi|58688686|gb|CK077373.1|CK077373
genomic: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAGgtctgttaaa ... gaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
EST: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAG CACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTEST: gi|29665936|gb|CB662211.1|CB662211
genomic: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAGgtctgttaaa ... gaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
EST: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAG CACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTEST: gi|58691915|gb|CK080602.1|CK080602
genomic: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAGgtctgttaaa ... gaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
EST: TTGCTGTGTGCGAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAG CACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTEST: gi|29686057|gb|CB682332.1|CB682332
genomic: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAGgtctgttaaa ... gaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
EST: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAG CACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
genomic: TTGCTGTGTGCAAAGCAGGAGCCATGGTGAAGAAGATTCCCCTTTACCAGgtctgttaaa ... gaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCT
taactttgttcttctgaaacttcagaacctatgctaaaacatcaagaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTTTCAATGTGATCAATGGAGGATCCCATGCTGGAAACAAACTTGCCATGC
tgctaaa putative branch site (score: 2)
taaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttaaacaactgcatcggtatataactttgttcttctgaaacttcagaacctatgctaaaacatcaagaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTTTCAATGTGATCAATGGAGGATCCCATGCTGGAAACAAACTTGCCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA