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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagcttatacatacatctctgcaagtgctactgctacttttgtgtgctactgaaattcctcacttgcactgtatgtatttgttaaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTATGCTGTGAGCAGGGAGCAGACCAATGCTCAAGGAGAGAAGATGTACATTC

Basic information

species Oryza sativa
transcript LOC_Os06g01850.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g01850.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G168143_T01 (Zea mays), 3'ss of exon 6
gtcagcttatacatacatctctgcaagtgctactgctacttttgtgtgctactgaaattcctcacttgcactgtatgtatttgttaaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTATGCTGTGAGCAGGGAGCAGACCAATGCTCAAGGAGAGAAGATGTACATTC
    |    |||||  |||| | ||||     ||   |  |  ||     |  ||  |     |  ||| || | || |||       ||||||||||| |  || ||||||| || |||||| ||||||||||||||||| || || || ||| |||||||||| || ||    || |||| ||||||||| |
----gtcagtacatcgatctgtacaag-----ctaggaggtcagtac---atcgatctctacaaggtgctct-tgtgcatt-------attcagGAGTTCGGGAAGATGAAGGAGAGAGCGCCGGAGAACTTCCGGGTCGACTACGCCGTCAGCCGGGAGCAGACGAACGCGGCGGGGGAGAGGATGTACATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29657697|gb|CB653972.1|CB653972
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|38476629|gb|CF960762.1|CF960762
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86253303|gb|CI058228.1|CI058228
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86524406|gb|CI164612.1|CI164612
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|88829290|gb|CI074160.1|CI074160
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86880051|gb|CI340049.1|CI340049
EST:     CCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|88201693|gb|CI202048.1|CI202048
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACCAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86517850|gb|CI158056.1|CI158056
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86521026|gb|CI161232.1|CI161232
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|88980632|gb|CI026694.1|CI026694
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACCAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86522263|gb|CI162469.1|CI162469
EST:     GCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: GCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86535275|gb|CI175481.1|CI175481
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTGTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86534942|gb|CI175148.1|CI175148
EST:     GAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: GAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86537200|gb|CI177406.1|CI177406
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|29659028|gb|CB655303.1|CB655303
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|38475687|gb|CF959820.1|CF959820
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86902962|gb|CI312339.1|CI312339
EST:     CTTGGCTCTTC-TGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86536909|gb|CI177115.1|CI177115
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|87019948|gb|CI299346.1|CI299346
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86535334|gb|CI175540.1|CI175540
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|58695210|gb|CK083897.1|CK083897
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|29683077|gb|CB679352.1|CB679352
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86863375|gb|CI333570.1|CI333570
EST:     TCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: TCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86250594|gb|CI003712.1|CI003712
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86420526|gb|CI056515.1|CI056515
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|87025972|gb|CI257130.1|CI257130
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|29683657|gb|CB679932.1|CB679932
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|88832387|gb|CI019328.1|CI019328
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|33798466|gb|CF325091.1|CF325091
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|29685686|gb|CB681961.1|CB681961
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|29685685|gb|CB681960.1|CB681960
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86252076|gb|CI055813.1|CI055813
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|87012717|gb|CI295161.1|CI295161
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86253156|gb|CI058081.1|CI058081
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|87026011|gb|CI257169.1|CI257169
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|33799855|gb|CF325793.1|CF325793
EST:     CTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|88844088|gb|CI001145.1|CI001145
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|89161746|gb|CI100906.1|CI100906
EST:     CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: CTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
EST: gi|86527241|gb|CI167447.1|CI167447
EST:     GTCCCAACTAGCAGTTCTTTACTCTACAAGGAG                         GAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT
genomic: GTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 73 (downstream exon)
Score: 71

TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGgtcagcttat ... taaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTATGCTGTGAGCAGGGAGCAGACCAATGCTCAAGGAGAGAAGATGTACATTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgtgctactgaaattcctcacttgcactgtatgtatttgttaaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTATGCTGTGAGCAGGGAGCAGACCAATGCTCAAGGAGAGAAGATGTACATTC
                   tcctcac  putative branch site (score: 71)
                                  tatgtatttgttaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagcttatacatacatctctgcaagtgctactgctacttttgtgtgctactgaaattcctcacttgcactgtatgtatttgttaaaattcagGAGTTTGACAAAATGAAGGCGAAAGCGCCAGAGAACTTCCGGGTCGATTATGCTGTGAGCAGGGAGCAGACCAATGCTCAAGGAGAGAAGATGTACATTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG