1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgtccattgggttatcatgttttgttcgggcacttgtcaaatacattctgataccttgatgtaaccattctcaagcacacccatgctactcgtgtagGCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAAACAGCTGCTTTATGGGACAATGGTTTTTGTTCGTCAAACAATTGTTGCA
species | Oryza sativa |
transcript | LOC_Os06g01390.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAG GCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAAEST: gi|29681783|gb|CB678058.1|CB678058
genomic: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAGgtttgtccat ... actcgtgtagGCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAA
EST: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAG GCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAAEST: gi|58652779|gb|CK041459.1|CK041459
genomic: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAGgtttgtccat ... actcgtgtagGCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAA
EST: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAG GCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAAEST: gi|58659147|gb|CK047827.1|CK047827
genomic: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAGgtttgtccat ... actcgtgtagGCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAA
EST: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAG GCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAAEST: gi|568950|gb|D39799.1|D39799
genomic: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAGgtttgtccat ... actcgtgtagGCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAA
EST: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAG GCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAA
genomic: GTTCTGCGATTTGACCATGTGCGCATCCCAAGGGATCAAATGTTGATGAGgtttgtccat ... actcgtgtagGCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAA
acattctgataccttgatgtaaccattctcaagcacacccatgctactcgtgtagGCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAAACAGCTGCTTTATGGGACAATGGTTTTTGTTCGTCAAACAATTGTTGCA
atgtaac putative branch site (score: 67)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccattgggttatcatgttttgttcgggcacttgtcaaatacattctgataccttgatgtaaccattctcaagcacacccatgctactcgtgtagGCTTTCACAAGTTACGAAAGAGGGAAAATATGTGCACTCAGATGTCCCAAAACAGCTGCTTTATGGGACAATGGTTTTTGTTCGTCAAACAATTGTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT